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Report for CCDS58490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58490.1 Public Homo sapiens 16 MTHFSD 24 110 108 CCDS HistoryNCBI Gene:64779Re-query CCDS DB by CCDS ID:58490.1Re-query CCDS DB by GeneID:64779See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58490.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543303.6 ENSP00000444003.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543303.6Link to Ensembl Protein Viewer:ENSP00000444003.2Re-query CCDS DB by Nucleotide ID:ENST00000543303Re-query CCDS DB by Protein ID:ENSP00000444003
Original member Current member NCBI NM_001159379.2 NP_001152851.1 Accepted alive Link to Nucleotide Sequence:NM_001159379.2Link to Protein Sequence:NP_001152851.1Re-query CCDS DB by Nucleotide ID:NM_001159379Re-query CCDS DB by Protein ID:NP_001152851Link to BLAST:NP_001152851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152851.1 382 Q2M296-4 382 100% 0 0

Chromosomal Locations for CCDS 58490.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 86532011 86532481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86541697 86541822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86542101 86542213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86546559 86546649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86548464 86548577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86552179 86552292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86554645 86554748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86555169 86555184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGAGCCGAGGGCAGGTGTCTCCAAACAGGACATACGTGAACAAATTTGGGGCTACATGGAATCACAAA
ATTTAGCTGACTTTCCCCGACCTGTTCATCACAGGATACCCAACTTTAAGGGCGCTTCTCATGCTGCCGA
GCAACTCCCACGCTTGCAGGCGTTCAAAACGGCCAGGACCATTAAAGTAAATCCTGATGCCCCCCAGAAA
AGTGCTCGCTTCTTCGTCCTTGAAAGCAAAAAAACATTGTTGGTTCCAACACCACGACTGAGAACGGGAT
TGTTTAATAAGATCACACCACCCCCTGGGGCAACTAAAGACATCTTGAGAAAATGTGCCACCTCTCAGGG
TGTGAGGAACTACAGTGTCCCCATAGGCTTGGACTCCAGAGTCCTCGTGGATTTAGTTGTGGTGGGATCC
GTCGCCGTTTCTGAAAAAGGCTGGAGAATCGGGAAGGGAGAAGGCTACGCCGATCTGGAATATGCCATGA
TGGTATCCATGGGCGCCGTCAGCAAGGAGACGCCGGTGGTCACCATCGTCCACGACTGCCAGGTCGTGGA
CATCCCTGAAGAGCTTGTTGAGGAGCACGACATCACTGTGGACTACATCCTCACTCCAACCAGAGTCATC
GCCACAGGCTGCAAGCGCCCAAAGCCAATGGGAATCACCTGGTTCAAGATCAGCCTGGAGATGATGGAGA
AAATCCCCATACTGAGGAGCCTCCGCGCCCGAGAGCAGCAGGCTGGGAAGGATGTCACCCTCCAGGGTGA
GCACCAGCACCTTCCGGAACCAGGCTGCCAGCAGACAGTGCCCCTGAGTGTTGGCAGGAGGCCCCCGGAC
ACACCCGGACCAGAAACCAATTCCATGGAGGCAGCCCCTGGCTCCCCACCAGGGGAGGGTGCCCCGCTTG
CAGCCGATGTTTACGTTGGGAACCTCCCCGGGGACGCCCGTGTGAGTGACCTGAAGAGAGCCCTGCGGGA
ACTCGGCTCCGTGCCCCTGCGGCTCACCTGGCAGGGCCCGCGGCGCAGAGCCTTCCTCCATTACCCGGAC
TCTGCCGCAGCCCAGCAGGCCGTCTCCTGCTTGCAGGGCCTGCGCCTGGGCACCGACACCCTGAGGGTGG
CGCTGGCCAGGCAGCAGAGGGACAAGTGA

Translation (382 aa):
MEPRAGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTARTIKVNPDAPQK
SARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGLDSRVLVDLVVVGS
VAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVVDIPEELVEEHDITVDYILTPTRVI
ATGCKRPKPMGITWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPD
TPGPETNSMEAAPGSPPGEGAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPD
SAAAQQAVSCLQGLRLGTDTLRVALARQQRDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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