NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58449.1 Public Homo sapiens 16 HIRIP3 24 110 108 CCDS HistoryNCBI Gene:8479Re-query CCDS DB by CCDS ID:58449.1Re-query CCDS DB by GeneID:8479See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000564026.1 ENSP00000456824.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564026.1Link to Ensembl Protein Viewer:ENSP00000456824.1Re-query CCDS DB by Nucleotide ID:ENST00000564026Re-query CCDS DB by Protein ID:ENSP00000456824
Original member Current member NCBI NM_001197323.1 NP_001184252.1 Accepted alive Link to Nucleotide Sequence:NM_001197323.1Link to Protein Sequence:NP_001184252.1Re-query CCDS DB by Nucleotide ID:NM_001197323Re-query CCDS DB by Protein ID:NP_001184252Link to BLAST:NP_001184252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184252.1 175 Q9BW71-3 175 100% 0 0

Chromosomal Locations for CCDS 58449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29993500 29993557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29993640 29993808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29995103 29995217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29995343 29995463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29995541 29995605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGCGCGGGAGAAGGAGATGCAGGAGTTCACCCGTAGCTTCTTCCGAGGCCGCCCGGACCTCAGCACGC
TTACGCATTCCATCGTGCGGCGGAGGTACTTAGCTCACTCGGGCCGCAGCCACCTGGAGCCCGAGGAGAA
GCAGGCACTGAAGCGGCTGGTGGAGGAGGAGCTGCTGAAGATGCAGGTGGATGAAGCCGCTTCCAGGGAA
GACAAACTGGACCTTACCAAGAAGGGCAAGAGGCCTCCCACCCCTTGTAGCGACCCGGAGAGAAAAAGGT
TCCGCTTCAATTCAGAGTCGGGCTGGCTCAGGTCGCCGTGGAGAGGACCACCCGGCTGTGATGAGGCTGA
AGCGCTACATTCGGGCCTGTGGTGCCCATCGAAACTACAAGAAGCTGTTGGGCTCCTGTTGCTCACACAA
GGAGCGCCTGAGTATCCTCCGGGCAGAACTGGAAGCGCTAGGCATGAAGGGTACCCCTTCCCTAGGGAAG
TGTCGGGCCCTGAAGGAGCAGAGGGAGGAGGCAGCTGA

Translation (175 aa):
MAREKEMQEFTRSFFRGRPDLSTLTHSIVRRRYLAHSGRSHLEPEEKQALKRLVEEELLKMQVDEAASRE
DKLDLTKKGKRPPTPCSDPERKRFRFNSESGWLRSPWRGPPGCDEAEALHSGLWCPSKLQEAVGLLLLTQ
GAPEYPPGRTGSARHEGYPFPREVSGPEGAEGGGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH