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Report for CCDS58349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58349.1 Public Homo sapiens 15 ARHGAP11A 24 110 108 CCDS HistoryNCBI Gene:9824Re-query CCDS DB by CCDS ID:58349.1Re-query CCDS DB by GeneID:9824See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58349.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000567348.5 ENSP00000454575.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567348.5Link to Ensembl Protein Viewer:ENSP00000454575.1Re-query CCDS DB by Nucleotide ID:ENST00000567348Re-query CCDS DB by Protein ID:ENSP00000454575
Original member Current member NCBI NM_199357.3 NP_955389.1 Accepted alive Link to Nucleotide Sequence:NM_199357.3Link to Protein Sequence:NP_955389.1Re-query CCDS DB by Nucleotide ID:NM_199357Re-query CCDS DB by Protein ID:NP_955389Link to BLAST:NP_955389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955389.1 501 Q6P4F7-2 501 100% 0 0

Chromosomal Locations for CCDS 58349.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 32616212 32616340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32620108 32620178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32623492 32623588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32624173 32624426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32625080 32625243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32625487 32625633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32628728 32628802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32629595 32629762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32632979 32633108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32633933 32634041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32635777 32635938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGTGGGATCAGAGGCTGGTGAGGTTGGCCCTGTTGCAGCATCTGCGGGCCTTCTATGGTATTAAGGTGA
AGGGTGTCCGTGGGCAGTGCGATCGCAGGAGACATGAAACAGCAGCCACGGAAATAGGGGGTAAAATATT
TGGAGTACCTTTTAATGCACTGCCCCATTCTGCTGTACCAGAATATGGACACATTCCAAGCTTTCTTGTC
GATGCTTGCACATCTTTAGAAGACCATATTCATACCGAAGGGCTTTTTCGGAAATCAGGATCTGTGATTC
GCCTAAAAGCACTAAAGAATAAAGTGGATCATGGTGAAGGTTGCCTATCTTCTGCACCTCCTTGTGATAT
TGCGGGACTTCTTAAGCAGTTTTTTAGGGAACTGCCAGAGCCCATTCTCCCAGCTGATTTGCATGAAGCA
CTTTTGAAAGCTCAACAGTTAGGCACAGAGGAAAAGAATAAAGCTACACTGTTGCTCTCCTGTCTTCTGG
CTGACCACACAGTTCATGTATTAAGATACTTCTTTAACTTTCTCAGGAATGTTTCTCTTAGATCCAGTGA
GAATAAGATGGACAGCAGCAATCTTGCAGTAATATTTGCACCGAATCTTCTTCAGACAAGTGAAGGACAT
GAAAAGATGTCTTCTAACACAGAAAAGAAGCTACGATTACAGGCTGCAGTAGTACAGACTCTTATCGATT
ATGCATCAGATATTGGGCGTGTACCAGATTTTATCCTGGAAAAGATACCAGCCATGTTGGGTATTGATGG
TCTCTGTGCTACTCCATCACTGGAAGGCTTTGAAGAAGGTGAATATGAAACTCCTGGTGAATATAAGAGA
AAGAGAAGACAAAGTGTAGGAGATTTTGTTAGTGGAGCACTAAATAAATTTAAACCTAACAGAACACCTT
CTATTACACCTCAAGAAGAAAGAATTGCCCAGCTATCTGAATCACCAGTGATTCTTACACCAAATGCTAA
GCGTACATTGCCAGTAGATTCTTCTCATGGTTTCTCAAGTAAGAAAAGGAAGTCCATCAAGCACAATTTT
AACTTTGAGCTGTTGCCAAGTAATCTCTTCAATAGCAGTTCTACACCGGTATCAGTTCACATCGATACAA
GCTCAGAAGGGTCATCTCAGAGTTCACTCTCTCCTGTACTCATTGGTGGAAACCATTTGATCACTGCAGG
TGTGCCAAGGCGAAGTAAAAGAATTGCAGGCAAAAAAGTTTGCAGAGTGGAATCAGGAAAAGCAGGCTGC
TTTTCTCCTAAAATCAGCCATAAAGAAAAGGTTCGAAGATCTCTGCGTTTGAAATTCAATCTAGGGAAAA
ATGGCAGAGAAGTAAATGGATGTTCTGGTGTCAATAGATATGAAAGTGTTGGTTGGCGACTTGCAAATCA
ACAAAGTTTAAAAAATCGAATTGAATCTGTAAAAACAGGTTTGCTTTTTAGCCCAGATGTTGATGAAAAG
TTACCAAAGAAAGGTACATTTACATACTACTGTTAG

Translation (501 aa):
MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGHIPSFLV
DACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEA
LLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGH
EKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKR
KRRQSVGDFVSGALNKFKPNRTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNF
NFELLPSNLFNSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTGLLFSPDVDEK
LPKKGTFTYYC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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