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Report for CCDS58326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58326.1 Public Homo sapiens 14 RDH11 24 110 108 CCDS HistoryNCBI Gene:51109Re-query CCDS DB by CCDS ID:58326.1Re-query CCDS DB by GeneID:51109See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58326.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428130.6 ENSP00000416395.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428130.6Link to Ensembl Protein Viewer:ENSP00000416395.2Re-query CCDS DB by Nucleotide ID:ENST00000428130Re-query CCDS DB by Protein ID:ENSP00000416395
Original member Current member NCBI NM_001252650.2 NP_001239579.1 Accepted alive Link to Nucleotide Sequence:NM_001252650.2Link to Protein Sequence:NP_001239579.1Re-query CCDS DB by Nucleotide ID:NM_001252650Re-query CCDS DB by Protein ID:NP_001239579Link to BLAST:NP_001239579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239579.1 248 Q8TC12-3 248 100% 0 0

Chromosomal Locations for CCDS 58326.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 67678321 67678423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67685015 67685204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67691140 67691244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67692438 67692593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67692934 67693052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67695630 67695703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGTTGAGCTCATGTTCCCGCTGTTGCTCCTCCTTCTGCCCTTCCTTCTGTATATGGCTGCGCCCCAAA
TCAGGAAAATGCTGTCCAGTGGGGTGTGTACATCAACTGTTCAGCTTCCTGGGAAAGTAGTTGTGGTCAC
AGGAGCTAATACAGGTATCGGGAAGGAGACAGCCAAAGAGCTGGCTCAGAGAGGAGCTCGAGTATATTTA
GCTTGCCGGGATGTGGAAAAGGGGGAATTGGTGGCCAAAGAGATCCAGACCACGACAGGGAACCAGCAGG
TGTTGGTGCGGAAACTGGACCTGTCTGATACTAAGTCTATTCGAGCTTTTGCTAAGGGCTTCTTAGCTGA
GGAAAAGCACCTCCACGTTTTGATCAACAATGCAGGAGTGATGATGTGTCCGTACTCGAAGACAGCAGAT
GGCTTTGAGATGCACATAGGAGTCAACCACTTGGGCTCTGGCGTTACGACGTATTCTGTACACCCTGGCA
CAGTCCAATCTGAACTGGTTCGGCACTCATCTTTCATGAGATGGATGTGGTGGCTTTTCTCCTTTTTCAT
CAAGACTCCTCAGCAGGGAGCCCAGACCAGCCTGCACTGTGCCTTAACAGAAGGTCTTGAGATTCTAAGT
GGGAATCATTTCAGTGACTGTCATGTGGCATGGGTCTCTGCCCAAGCTCGTAATGAGACTATAGCAAGGC
GGCTGTGGGACGTCAGTTGTGACCTGCTGGGCCTCCCAATAGACTAA

Translation (248 aa):
MVELMFPLLLLLLPFLLYMAAPQIRKMLSSGVCTSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYL
ACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTAD
GFEMHIGVNHLGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFIKTPQQGAQTSLHCALTEGLEILS
GNHFSDCHVAWVSAQARNETIARRLWDVSCDLLGLPID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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