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Report for CCDS58209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58209.1 Public Homo sapiens 12 MGST1 24 110 108 CCDS HistoryNCBI Gene:4257Re-query CCDS DB by CCDS ID:58209.1Re-query CCDS DB by GeneID:4257See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535309.5 ENSP00000438308.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535309.5Link to Ensembl Protein Viewer:ENSP00000438308.1Re-query CCDS DB by Nucleotide ID:ENST00000535309Re-query CCDS DB by Protein ID:ENSP00000438308
Original member Current member NCBI NM_001267598.2 NP_001254527.1 Accepted alive Link to Nucleotide Sequence:NM_001267598.2Link to Protein Sequence:NP_001254527.1Re-query CCDS DB by Nucleotide ID:NM_001267598Re-query CCDS DB by Protein ID:NP_001254527Link to BLAST:NP_001254527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254527.1 87 P10620-2 87 100% 0 0

Chromosomal Locations for CCDS 58209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16354253 16354378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16357605 16357699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16376122 16376164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGGTTGACCTCACCCAGGTAATGGATGATGAAGTATTCATGGCTTTTGCATCCTATGCAACAATTATTC
TTTCAAAAATGATGCTTATGAGTACTGCAACTGCATTCTATAGATTGACAAGAAAGGTTTTTGCCAATCC
AGAAGACTGTGTAGCATTTGGCAAAGGAGAAAATGCCAAGAAGTATCTTCGAACAGATGACAGAGTAGAA
CGTGTACGCAGAATCAAACAAACCCTGAGCATTTATCTTGCCTCTTCTATATAA

Translation (87 aa):
MVDLTQVMDDEVFMAFASYATIILSKMMLMSTATAFYRLTRKVFANPEDCVAFGKGENAKKYLRTDDRVE
RVRRIKQTLSIYLASSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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