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Report for CCDS58130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58130.1 Public Homo sapiens 11 PRDM11 24 110 108 CCDS HistoryNCBI Gene:56981Re-query CCDS DB by CCDS ID:58130.1Re-query CCDS DB by GeneID:56981See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 58130.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424263.6 ENSP00000394314.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424263.6Link to Ensembl Protein Viewer:ENSP00000394314.2Re-query CCDS DB by Nucleotide ID:ENST00000424263Re-query CCDS DB by Protein ID:ENSP00000394314
Original member Current member EBI ENST00000530656.5 ENSP00000435976.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530656.5Link to Ensembl Protein Viewer:ENSP00000435976.2Re-query CCDS DB by Nucleotide ID:ENST00000530656Re-query CCDS DB by Protein ID:ENSP00000435976
Original member Current member NCBI NM_001256696.2 NP_001243625.1 Accepted alive Link to Nucleotide Sequence:NM_001256696.2Link to Protein Sequence:NP_001243625.1Re-query CCDS DB by Nucleotide ID:NM_001256696Re-query CCDS DB by Protein ID:NP_001243625Link to BLAST:NP_001243625.1
Original member Current member NCBI NM_001359633.2 NP_001346562.2 Accepted alive Link to Nucleotide Sequence:NM_001359633.2Link to Protein Sequence:NP_001346562.2Re-query CCDS DB by Nucleotide ID:NM_001359633Re-query CCDS DB by Protein ID:NP_001346562Link to BLAST:NP_001346562.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243625.1 477 Q9NQV5-2 477 100% 0 0
NP_001346562.2 477 Q9NQV5-2 477 100% 0 0

Chromosomal Locations for CCDS 58130.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45181767 45181885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45182246 45182349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45182861 45183123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45204711 45204778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45219570 45219757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45224217 45224908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGACCGAGAACATGAAGGAGTGCTTGGCCCAGACCAATGCAGCCGTGGGGGATATGGTGACGGTGGTGA
AGACGGAGGTCTGCTCACCACTCCGAGACCAGGAGTATGGCCAGCCCTGCTCTAGGAGACCGGACTCCTC
GGCCATGGAAGTTGAGCCCAAGAAACTGAAGGGGAAGCGCGACCTCATCGTGCCCAAAAGCTTCCAGCAA
GTGGACTTCTGGTTCTGTGAGTCCTGCCAGGAGTACTTCGTGGATGAATGCCCAAACCATGGCCCCCCGG
TGTTTGTGTCTGACACACCGGTGCCCGTGGGCATCCCAGACCGGGCGGCGCTCACCATCCCACAGGGCAT
GGAGGTGGTCAAGGACACTAGTGGAGAGAGTGACGTGCGATGTGTAAACGAGGTCATCCCCAAGGGCCAC
ATCTTCGGCCCCTATGAGGGGCAGATCTCCACCCAGGACAAATCAGCTGGCTTCTTCTCCTGGCTGATTG
TGGACAAGAACAACCGCTATAAGTCCATAGATGGCTCAGACGAGACCAAAGCCAACTGGATGAGGTACGT
GGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCGTTCCAGCACAGTGAGCGCATCTACTTCCGG
GCGTGCAGGGACATCCGGCCTGGGGAGTGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGC
ACAGCATGTCCCAGGAAACCATTCACCGCAACCTGGCCAGAGGAGAGAAGAGGTTGCAGAGGGAGAAGTC
TGAGCAGGTTCTGGATAACCCAGAAGACCTGAGGGGTCCCATTCATCTCTCTGTGCTGAGACAGGGCAAA
AGTCCCTACAAGCGTGGCTTTGATGAGGGGGATGTACACCCCCAAGCTAAGAAGAAGAAAATTGACCTGA
TTTTCAAGGATGTTCTGGAGGCCTCACTGGAATCTGCGAAGGTGGAAGCCCACCAGTTGGCCCTGAGCAC
CTCACTGGTCATCAGGAAAGTCCCCAAATACCAGGATGACGCCTACAGTCAGTGTGCAACAACAATGACC
CATGGTGTGCAGAATATAGGCCAGACCCAGGGGGAGGGGGACTGGAAGGTCCCCCAGGGGGTCTCCAAGG
AGCCAGGCCAATTGGAGGATGAAGAAGAGGAGCCTTCATCATTCAAGGCCGACAGTCCTGCCGAGGCCTC
CCTTGCATCTGACCCTCATGAACTTCCCACCACCTCTTTTTGCCCTAACTGTATTCGCCTAAAGAAGAAG
GTTCGGGAGCTCCAGGCAGAATTAGACATGCTTAAGTCTGGGAAACTTCCTGAGCCCCCCGTATTGCCAC
CACAGGTACTGGAGCTCCCAGAGTTCTCGGACCCTGCAGGTAAGTTGGTTTGGATGAGATTATTGTCGGA
GGGCAGAGTACGCAGTGGGCTGTGTGGAGGGTAG

Translation (477 aa):
MTENMKECLAQTNAAVGDMVTVVKTEVCSPLRDQEYGQPCSRRPDSSAMEVEPKKLKGKRDLIVPKSFQQ
VDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGH
IFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFR
ACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK
SPYKRGFDEGDVHPQAKKKKIDLIFKDVLEASLESAKVEAHQLALSTSLVIRKVPKYQDDAYSQCATTMT
HGVQNIGQTQGEGDWKVPQGVSKEPGQLEDEEEEPSSFKADSPAEASLASDPHELPTTSFCPNCIRLKKK
VRELQAELDMLKSGKLPEPPVLPPQVLELPEFSDPAGKLVWMRLLSEGRVRSGLCGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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