CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS58105.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
58105.1	Public	Homo sapiens	10	TUBGCP2	24	110	108

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58105.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000543663.6	ENSP00000446093.1		Accepted	alive
		NCBI	NM_001256617.2	NP_001243546.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001243546.1	930	Q9BSJ2-4	930	100%	0	0

Chromosomal Locations for CCDS 58105.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)

Genome Browser links:

Chromosome	Start	Stop
10	133279766	133279901
10	133281273	133281436
10	133282223	133282342
10	133283078	133283221
10	133283882	133284002
10	133285085	133285213
10	133285456	133285628
10	133288129	133288309
10	133288840	133289020
10	133289824	133289969
10	133292499	133292688
10	133293039	133293238
10	133293562	133293769
10	133297321	133297404
10	133297952	133298111
10	133299427	133299603
10	133299985	133300113
10	133302792	133302941

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGAGTGAATTTCGGATTCACCATGACGTCAATGAACTGCTTAGCCTGCTGCGTGTCCACGGAGGAGATG GGGCTGAGGTCTACATTGACCTGCTTCAAAAGAACAGGACCCCGTACGTCACTACCACTGTCTCTGCTCA CAGTGCCAAGGTTAAAATTGCAGAGTTTTCTCGTACTCCAGAAGACTTTCTAAAGAAATATGATGAACTG AAATCTAAAAATACAAGGAACCTTGACCCGCTGGTGTACCTGTTGTCAAAGCTCACGGAAGACAAAGAGA CTCTGCAGTACTTACAACAGAATGCAAAAGAAAGAGCTGAGCTTGCAGCCGCTGCTGTGGGCAGCAGTAC CACCAGCATCAACGTCCCTGCCGCGGCCTCCAAGATCTCCATGCAGGAGCTTGAGGAACTGAGGAAGCAG CTTGGCAGCGTGGCCACAGGCTCCACGCTGCAGCAGTCTCTGGAACTTAAAAGAAAGATGCTTCGAGACA AGCAGAACAAAAAAAATTCAGGCCAGCACCTCCCCATCTTCCCAGCATGGGTGTATGAGAGACCTGCCCT GATCGGGGATTTCCTGATTGGTGCTGGCATCAGCACAGACACCGCTTTGCCGATAGTTCTTTTGAGATGG AATCTCGCTCTGTCGCCCAGGCTGAAGTGCAGTGGCGTGATCTCGGCACACTGCAACCTCCACCTCCCAG GCACGTTGCCCCTGGCCTCGCAGGAGTCGGCCGTGGTGGAGGACCTGCTGTACGTGCTGGTGGGCGTGGA CGGGAGGTACGTCAGTGCTCAGCCCCTGGCTGGGAGGCAGAGCCGGACCTTCCTCGTGGACCCCAACCTG GACCTGTCCATCAGGGAGCTGGTGCACAGGATCCTCCCAGTGGCCGCCAGCTACTCCGCTGTGACCAGGT TCATTGAAGAGAAGTCTTCCTTCGAGTACGGGCAGGTGAACCACGCCCTGGCGGCCGCCATGCGCACCCT GGTGAAGGAGCACCTGATTCTGGTGTCACAGCTGGAGCAGCTGCACAGGCAGGGCCTCCTTTCGCTGCAG AAGCTCTGGTTCTACATCCAGCCAGCCATGCGCACCATGGACATCCTGGCCTCCCTCGCCACCTCGGTGG ACAAAGGCGAATGTCTTGGGGGGTCCACGCTGAGCCTGCTCCACGACAGGAGCTTCAGCTACACAGGGGA CAGCCAGGCGCAGGAGCTATGCCTGTACCTAACCAAGGCGGCCAGTGCTCCCTACTTCGAGGTTCTGGAG AAGTGGATCTACAGGGGCATCATCCACGACCCATACAGTGAGTTTATGGTCGAGGAGCACGAGCTGCGGA AGGAGAGGATCCAGGAGGATTACAACGACAAGTACTGGGACCAGCGGTACACCATCGTCCAGCAGCAGAT CCCGTCCTTCCTGCAGAAAATGGCGGACAAGATCCTCAGCACAGGAAAATATCTAAATGTGGTCAGAGAG TGTGGCCATGACGTCACCTGCCCGGTGGCTAAAGAGATCATCTACACGTTAAAAGAGCGGGCGTATGTGG AGCAGATCGAGAAGGCGTTTAACTACGCCAGCAAGGTGCTGCTGGACTTCCTGATGGAGGAGAAGGAGCT GGTGGCTCACCTCAGGTCCATCAAGCGCTACTTCCTCATGGACCAGGGCGACTTCTTCGTGCACTTCATG GACCTCGCGGAGGAGGAGCTCCGGAAGCCGGTGGAGGACATCACGCCCCCTCGCCTGGAAGCGCTCCTGG AGCTGGCGCTGCGCATGAGCACGGCCAACACTGACCCCTTCAAGGACGACCTCAAGATCGACCTGATGCC CCATGACCTCATCACTCAGCTCTTGCGCGTCCTGGCCATCGAGACCAAGCAGGAGAAGGCGATGGCGCAC GCCGACCCCACGGAGCTGGCGCTGAGCGGCCTGGAGGCCTTCTCTTTCGACTACATCGTCAAGTGGCCCC TTTCGCTCATCATCAACAGGAAAGCCCTCACTCGCTACCAGATGCTCTTCAGGCACATGTTCTACTGCAA GCACGTGGAGCGGCAGCTCTGCAGCGTCTGGATCAGCAACAAAACCGCCAAGCAGCACTCGCTGCACTCC GCCCAGTGGTTTGCTGGGGCTTTCACTCTGCGGCAGCGAATGCTCAACTTCGTCCAGAATATTCAATACT ACATGATGTTTGAAGTGATGGAACCGACCTGGCACATCCTGGAGAAAAACCTGAAATCCGCCTCCAACAT TGACGACGTCCTTGGCCACCACACAGGCTTCCTGGACACCTGCCTGAAGGACTGCATGCTCACCAACCCC GAGCTGCTGAAGGTCTTCTCCAAGCTCATGTCTGTGTGCGTCATGTTCACCAACTGCATGCAGAAATTTA CACAGAGCATGAAATTAGATGGCGAGCTGGGCGGGCAGACGCTGGAGCACAGCACCGTCCTGGGGCTGCC CGCAGGGGCCGAGGAGCGGGCCCGGAAGGAGCTCGCCAGGAAGCACCTGGCTGAGCACGCAGACACTGTG CAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAACTTCTCAGCCCACCTGCTGGACC TCCTGGCCCGGCTGAGCATCTATAGCACCAGTGACTGTGAGCACGGCATGGCCAGCGTCATCTCCAGGCT TGACTTCAATGGTTTCTACACGGAGCGCCTGGAGCGCCTGTCTGCAGAGAGGAGCCAGAAGGCCACCCCC CAAGTGCCTGTCCTGCGGGGGCCCCCGGCTCCTGCACCCAGGGTCGCAGTCACCGCACAGTGA
Translation (930 aa):
MSEFRIHHDVNELLSLLRVHGGDGAEVYIDLLQKNRTPYVTTTVSAHSAKVKIAEFSRTPEDFLKKYDEL KSKNTRNLDPLVYLLSKLTEDKETLQYLQQNAKERAELAAAAVGSSTTSINVPAAASKISMQELEELRKQ LGSVATGSTLQQSLELKRKMLRDKQNKKNSGQHLPIFPAWVYERPALIGDFLIGAGISTDTALPIVLLRW NLALSPRLKCSGVISAHCNLHLPGTLPLASQESAVVEDLLYVLVGVDGRYVSAQPLAGRQSRTFLVDPNL DLSIRELVHRILPVAASYSAVTRFIEEKSSFEYGQVNHALAAAMRTLVKEHLILVSQLEQLHRQGLLSLQ KLWFYIQPAMRTMDILASLATSVDKGECLGGSTLSLLHDRSFSYTGDSQAQELCLYLTKAASAPYFEVLE KWIYRGIIHDPYSEFMVEEHELRKERIQEDYNDKYWDQRYTIVQQQIPSFLQKMADKILSTGKYLNVVRE CGHDVTCPVAKEIIYTLKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFM DLAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAH ADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHS AQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTGFLDTCLKDCMLTNP ELLKVFSKLMSVCVMFTNCMQKFTQSMKLDGELGGQTLEHSTVLGLPAGAEERARKELARKHLAEHADTV QLVSGFEATINKFDKNFSAHLLDLLARLSIYSTSDCEHGMASVISRLDFNGFYTERLERLSAERSQKATP QVPVLRGPPAPAPRVAVTAQ

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH