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Report for CCDS58104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58104.1 Public Homo sapiens 10 TUBGCP2 24 110 108 CCDS HistoryNCBI Gene:10844Re-query CCDS DB by CCDS ID:58104.1Re-query CCDS DB by GeneID:10844See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58104.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417178.7 ENSP00000395666.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417178.7Link to Ensembl Protein Viewer:ENSP00000395666.2Re-query CCDS DB by Nucleotide ID:ENST00000417178Re-query CCDS DB by Protein ID:ENSP00000395666
Original member Current member NCBI NM_001256618.2 NP_001243547.1 Accepted alive Link to Nucleotide Sequence:NM_001256618.2Link to Protein Sequence:NP_001243547.1Re-query CCDS DB by Nucleotide ID:NM_001256618Re-query CCDS DB by Protein ID:NP_001243547Link to BLAST:NP_001243547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243547.1 772 Q9BSJ2-3 772 100% 0 0

Chromosomal Locations for CCDS 58104.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 133279766 133279901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133281273 133281436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133282223 133282342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133283078 133283221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133283882 133284002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133285085 133285213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133285456 133285628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133288129 133288309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133288840 133289020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133289824 133289969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133292499 133292688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133293039 133293238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133293562 133293769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133297952 133298111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133299427 133299492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGCAGGAGCTTGAGGAACTGAGGAAGCAGCTTGGCAGCGTGGCCACAGGCTCCACGCTGCAGCAGTCTC
TGGAACTTAAAAGAAAGATGCTTCGAGACAAGCAGAACAAAAAAAATTCAGGCCAGCACCTCCCCATCTT
CCCAGCATGGGTGTATGAGAGACCTGCCCTGATCGGGGATTTCCTGATTGGTGCTGGCATCAGCACAGAC
ACCGCTTTGCCGATAGGCACGTTGCCCCTGGCCTCGCAGGAGTCGGCCGTGGTGGAGGACCTGCTGTACG
TGCTGGTGGGCGTGGACGGGAGGTACGTCAGTGCTCAGCCCCTGGCTGGGAGGCAGAGCCGGACCTTCCT
CGTGGACCCCAACCTGGACCTGTCCATCAGGGAGCTGGTGCACAGGATCCTCCCAGTGGCCGCCAGCTAC
TCCGCTGTGACCAGGTTCATTGAAGAGAAGTCTTCCTTCGAGTACGGGCAGGTGAACCACGCCCTGGCGG
CCGCCATGCGCACCCTGGTGAAGGAGCACCTGATTCTGGTGTCACAGCTGGAGCAGCTGCACAGGCAGGG
CCTCCTTTCGCTGCAGAAGCTCTGGTTCTACATCCAGCCAGCCATGCGCACCATGGACATCCTGGCCTCC
CTCGCCACCTCGGTGGACAAAGGCGAATGTCTTGGGGGGTCCACGCTGAGCCTGCTCCACGACAGGAGCT
TCAGCTACACAGGGGACAGCCAGGCGCAGGAGCTATGCCTGTACCTAACCAAGGCGGCCAGTGCTCCCTA
CTTCGAGGTTCTGGAGAAGTGGATCTACAGGGGCATCATCCACGACCCATACAGTGAGTTTATGGTCGAG
GAGCACGAGCTGCGGAAGGAGAGGATCCAGGAGGATTACAACGACAAGTACTGGGACCAGCGGTACACCA
TCGTCCAGCAGCAGATCCCGTCCTTCCTGCAGAAAATGGCGGACAAGATCCTCAGCACAGGAAAATATCT
AAATGTGGTCAGAGAGTGTGGCCATGACGTCACCTGCCCGGTGGCTAAAGAGATCATCTACACGTTAAAA
GAGCGGGCGTATGTGGAGCAGATCGAGAAGGCGTTTAACTACGCCAGCAAGGTGCTGCTGGACTTCCTGA
TGGAGGAGAAGGAGCTGGTGGCTCACCTCAGGTCCATCAAGCGCTACTTCCTCATGGACCAGGGCGACTT
CTTCGTGCACTTCATGGACCTCGCGGAGGAGGAGCTCCGGAAGCCGGTGGAGGACATCACGCCCCCTCGC
CTGGAAGCGCTCCTGGAGCTGGCGCTGCGCATGAGCACGGCCAACACTGACCCCTTCAAGGACGACCTCA
AGATCGACCTGATGCCCCATGACCTCATCACTCAGCTCTTGCGCGTCCTGGCCATCGAGACCAAGCAGGA
GAAGGCGATGGCGCACGCCGACCCCACGGAGCTGGCGCTGAGCGGCCTGGAGGCCTTCTCTTTCGACTAC
ATCGTCAAGTGGCCCCTTTCGCTCATCATCAACAGGAAAGCCCTCACTCGCTACCAGATGCTCTTCAGGC
ACATGTTCTACTGCAAGCACGTGGAGCGGCAGCTCTGCAGCGTCTGGATCAGCAACAAAACCGCCAAGCA
GCACTCGCTGCACTCCGCCCAGTGGTTTGCTGGGGCTTTCACTCTGCGGCAGCGAATGCTCAACTTCGTC
CAGAATATTCAATACTACATGATGTTTGAAGTGATGGAACCGACCTGGCACATCCTGGAGAAAAACCTGA
AATCCGCCTCCAACATTGACGACGTCCTTGGCCACCACACAGGCTTCCTGGACACCTGCCTGAAGGACTG
CATGCTCACCAACCCCGAGCTGCTGAAGGTCTTCTCCAAGCTCATGTCTGTGTGCGTCATGTTCACCAAC
TGCATGCAGAAATTTACACAGAGCATGAAATTAGATGGCGAGCTGGGCGGGCAGACGCTGGAGCACAGCA
CCGTCCTGGGGCTGCCCGCAGGGGCCGAGGAGCGGGCCCGGAAGGAGCTCGCCAGGAAGCACCTGGCTGA
GCACGCAGACACTGTGCAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAACTTCTCA
GCCCACCTGCTGGACCTCCTGGCCCGGCTGAGCATCTATAGCACCAGTGACTGTGAGCACGGCATGGCCA
GCGTCATCTCCAGGCTTGACTTCAATGGTTTCTACACGGAGCGCCTGGAGCGCCTGTCTGCAGAGAGGAG
CCAGAAGGCCACCCCCCAAGTGCCTGTCCTGCGGGGGCCCCCGGCTCCTGCACCCAGGGTCGCAGTCACC
GCACAGTGA

Translation (772 aa):
MQELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSGQHLPIFPAWVYERPALIGDFLIGAGISTD
TALPIGTLPLASQESAVVEDLLYVLVGVDGRYVSAQPLAGRQSRTFLVDPNLDLSIRELVHRILPVAASY
SAVTRFIEEKSSFEYGQVNHALAAAMRTLVKEHLILVSQLEQLHRQGLLSLQKLWFYIQPAMRTMDILAS
LATSVDKGECLGGSTLSLLHDRSFSYTGDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSEFMVE
EHELRKERIQEDYNDKYWDQRYTIVQQQIPSFLQKMADKILSTGKYLNVVRECGHDVTCPVAKEIIYTLK
ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDITPPR
LEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAHADPTELALSGLEAFSFDY
IVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFTLRQRMLNFV
QNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTGFLDTCLKDCMLTNPELLKVFSKLMSVCVMFTN
CMQKFTQSMKLDGELGGQTLEHSTVLGLPAGAEERARKELARKHLAEHADTVQLVSGFEATINKFDKNFS
AHLLDLLARLSIYSTSDCEHGMASVISRLDFNGFYTERLERLSAERSQKATPQVPVLRGPPAPAPRVAVT
AQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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