NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58044.1 Public Homo sapiens 1 GPR161 24 110 108 CCDS HistoryNCBI Gene:23432Re-query CCDS DB by CCDS ID:58044.1Re-query CCDS DB by GeneID:23432See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539777.5 ENSP00000437576.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539777.5Link to Ensembl Protein Viewer:ENSP00000437576.1Re-query CCDS DB by Nucleotide ID:ENST00000539777Re-query CCDS DB by Protein ID:ENSP00000437576
Original member Current member NCBI NM_001267613.1 NP_001254542.1 Accepted alive Link to Nucleotide Sequence:NM_001267613.1Link to Protein Sequence:NP_001254542.1Re-query CCDS DB by Nucleotide ID:NM_001267613Re-query CCDS DB by Protein ID:NP_001254542Link to BLAST:NP_001254542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254542.1 451 Q8N6U8-4 451 100% 0 0

Chromosomal Locations for CCDS 58044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168085531 168085796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168087585 168087704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168090564 168090668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168096508 168097232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168136257 168136396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGGAGGGCGTAGGTGCGTGCCCGGGACTCTGCCGATGCGGGCCGCGCCCCCTGGGGCCAAGAGACTCC
ACGTCCCGCTCAGGGCAAAGGGTGTGGGGAGAAGCGGTCACGCCCCTCGGCTGGAATCCGTGAGGACCAG
CTACTATGCTGTCCTGTACCCCATGGTGTACCCCATGAAGATCACAGGGAACCGGGCTGTGATGGCACTT
GTCTACATCTGGCTTCACTCGCTCATCGGCTGCCTGCCACCCCTGTTTGGTTGGTCATCCGTGGAGTTTG
ACGAGTTCAAATGGATGTGTGTGGCTGCTTGGCACCGGGAGCCTGGCTACACGGCCTTCTGGCAGATCTG
GTGTGCCCTCTTCCCCTTTCTGGTCATGCTGGTGTGCTATGGCTTCATCTTCCGCGTGGCCAGGGTCAAG
GCACGCAAGGTGCACTGTGGCACAGTCGTCATCGTGGAGGAGGATGCTCAGAGGACCGGGAGGAAGAACT
CCAGCACCTCCACCTCCTCTTCAGGCAGCAGGAGGAATGCCTTTCAGGGTGTGGTCTACTCGGCCAACCA
GTGCAAAGCCCTCATCACCATCCTGGTGGTCCTCGGTGCCTTCATGGTCACCTGGGGCCCCTACATGGTT
GTCATCGCCTCTGAGGCCCTCTGGGGGAAAAGCTCCGTCTCCCCGAGCCTGGAGACTTGGGCCACATGGC
TGTCCTTTGCCAGCGCTGTCTGCCACCCCCTGATCTATGGACTCTGGAACAAGACAGTTCGCAAAGAACT
ACTGGGCATGTGCTTTGGGGACCGGTATTATCGGGAACCATTTGTGCAACGACAGAGGACTTCCAGGCTC
TTCAGCATTTCCAACAGGATCACAGACCTGGGCCTGTCCCCACACCTCACTGCGCTCATGGCAGGTGGAC
AGCCCCTGGGGCACAGCAGCAGCACGGGGGACACTGGCTTCAGCTGCTCCCAGGACTCAGGGACAGATAT
GATGCTGCTTGAGGACTACACGTCTGATGACAACCCTCCCTCTCACTGCACTTGCCCACCCAAGAGAAGG
AGCTCGGTGACATTTGAGGATGAAGTGGAACAAATCAAAGAAGCTGCCAAGAACTCGATTCTTCATGTGA
AAGCTGAAGTACACAAGTCCTTGGACAGTTACGCAGCAAGCTTGGCCAAAGCCATTGAGGCCGAAGCCAA
AATCAACTTATTTGGGGAGGAGGCTTTGCCAGGGGTCTTGGTTACAGCACGGACTGTCCCGGGGGGCGGC
TTCGGGGGCCGCCGAGGCAGCAGAACTCTTGTGAGCCAGAGGCTGCAGTTGCAGAGCATCGAAGAAGGAG
ATGTTTTAGCTGCCGAGCAGAGATGA

Translation (451 aa):
MGGRRCVPGTLPMRAAPPGAKRLHVPLRAKGVGRSGHAPRLESVRTSYYAVLYPMVYPMKITGNRAVMAL
VYIWLHSLIGCLPPLFGWSSVEFDEFKWMCVAAWHREPGYTAFWQIWCALFPFLVMLVCYGFIFRVARVK
ARKVHCGTVVIVEEDAQRTGRKNSSTSTSSSGSRRNAFQGVVYSANQCKALITILVVLGAFMVTWGPYMV
VIASEALWGKSSVSPSLETWATWLSFASAVCHPLIYGLWNKTVRKELLGMCFGDRYYREPFVQRQRTSRL
FSISNRITDLGLSPHLTALMAGGQPLGHSSSTGDTGFSCSQDSGTDMMLLEDYTSDDNPPSHCTCPPKRR
SSVTFEDEVEQIKEAAKNSILHVKAEVHKSLDSYAASLAKAIEAEAKINLFGEEALPGVLVTARTVPGGG
FGGRRGSRTLVSQRLQLQSIEEGDVLAAEQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH