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Report for CCDS58029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58029.1 Public Homo sapiens 1 CREB3L4 24 110 108 CCDS HistoryNCBI Gene:148327Re-query CCDS DB by CCDS ID:58029.1Re-query CCDS DB by GeneID:148327See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368600.7 ENSP00000357589.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368600.7Link to Ensembl Protein Viewer:ENSP00000357589.3Re-query CCDS DB by Nucleotide ID:ENST00000368600Re-query CCDS DB by Protein ID:ENSP00000357589
Original member Current member NCBI NM_001255980.2 NP_001242909.1 Accepted alive Link to Nucleotide Sequence:NM_001255980.2Link to Protein Sequence:NP_001242909.1Re-query CCDS DB by Nucleotide ID:NM_001255980Re-query CCDS DB by Protein ID:NP_001242909Link to BLAST:NP_001242909.1
Original member Current member NCBI NM_001255981.2 NP_001242910.1 Accepted alive Link to Nucleotide Sequence:NM_001255981.2Link to Protein Sequence:NP_001242910.1Re-query CCDS DB by Nucleotide ID:NM_001255981Re-query CCDS DB by Protein ID:NP_001242910Link to BLAST:NP_001242910.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001242909.1 375 Q8TEY5-2 375 100% 0 0
NP_001242910.1 375 Q8TEY5-2 375 100% 0 0

Chromosomal Locations for CCDS 58029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153968526 153968639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153968930 153969176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153969334 153969455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153972744 153972836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153972972 153973078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973195 153973263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973380 153973464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973620 153973716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973872 153974065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGATCTCGGAATCCCTGACCTGCTGGACGCGTGGCTGGAGCCCCCAGAGGATATCTTCTCGACAGGAT
CCGTCCTGGAGCTGGGACTCCACTGCCCCCCTCCAGAGGTTCCGGGCCTTCAAGAGAGTGAGCCTGAAGA
TTTCTTGAAGCTTTTCATTGATCCCAATGAGGTGTACTGCTCAGAAGCATCTCCTGGCAGTGACAGTGGC
ATCTCTGAGGACCCCTGCCATCCAGACAGTCCCCCTGCCCCCAGGGCAACCAGTTCTCCTATGCTCTATG
AGGTTGTCTATGAGGCAGGGGCCCTGGAGAGGATGCAGGGGGAAACTGGGCCAAATGTAGGCCTTATCTC
CATCCAGCTAGATCAGTGGAGCCCAGCATTTATGGTGCCTGATTCCTGCATGGTCAGTGAGCTGCCCTTT
GATGCTCATGCCCACATCCTGCCCAGAGCAGGCACCGTAGCCCCAGTGCCCTGTACAACCCTGCTGCCCT
GTCAAACCCTGTTCCTGACCGATGAGGAGAAGCGTCTGCTGGGGCAGGAAGGGGTTTCCCTGCCCTCTCA
CCTGCCCCTCACCAAGGCAGAGGAGAGGGTCCTCAAGAAGGTCAGGAGGAAAATCCGTAACAAGCAGTCA
GCTCAGGACAGTCGGCGGCGGAAGAAGGAGTACATTGATGGGCTGGAGAGCAGGGTGGCAGCCTGTTCTG
CACAGAACCAAGAATTACAGAAAAAAGTCCAGGAGCTGGAGAGGCACAACATCTCCTTGGTAGCTCAGCT
CCGCCAGCTGCAGACGCTAATTGCTCAAACTTCCAACAAAGCTGCCCAGACCAGCACTTGTGTTTTGATT
CTTCTTTTTTCCCTGGCTCTCATCATCCTGCCCAGCTTCAGTCCATTCCAGAGTCGACCAGAAGCTGGGT
CTGAGGATTACCAGCCTCACGGAGTGACTTCCAGAAATATCCTGACCCACAAGGACGTAACAGAAAATCT
GGAGACCCAAGTGGTAGAGTCCAGACTGAGGGAGCCACCTGGAGCCAAGGATGCAAATGGCTCAACAAGG
ACACTGCTTGAGAAGATGGGAGGGAAGCCAAGACCCAGTGGGCGCATCCGGTCCGTGCTGCATGCAGATG
AGATGTGA

Translation (375 aa):
MDLGIPDLLDAWLEPPEDIFSTGSVLELGLHCPPPEVPGLQESEPEDFLKLFIDPNEVYCSEASPGSDSG
ISEDPCHPDSPPAPRATSSPMLYEVVYEAGALERMQGETGPNVGLISIQLDQWSPAFMVPDSCMVSELPF
DAHAHILPRAGTVAPVPCTTLLPCQTLFLTDEEKRLLGQEGVSLPSHLPLTKAEERVLKKVRRKIRNKQS
AQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNISLVAQLRQLQTLIAQTSNKAAQTSTCVLI
LLFSLALIILPSFSPFQSRPEAGSEDYQPHGVTSRNILTHKDVTENLETQVVESRLREPPGAKDANGSTR
TLLEKMGGKPRPSGRIRSVLHADEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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