NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58014.1 Public Homo sapiens 1 LRRC39 24 110 108 CCDS HistoryNCBI Gene:127495Re-query CCDS DB by CCDS ID:58014.1Re-query CCDS DB by GeneID:127495See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58014.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370138.1 ENSP00000359157.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370138.1Link to Ensembl Protein Viewer:ENSP00000359157.1Re-query CCDS DB by Nucleotide ID:ENST00000370138Re-query CCDS DB by Protein ID:ENSP00000359157
Original member Current member EBI ENST00000620882.4 ENSP00000480740.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620882.4Link to Ensembl Protein Viewer:ENSP00000480740.1Re-query CCDS DB by Nucleotide ID:ENST00000620882Re-query CCDS DB by Protein ID:ENSP00000480740
Original member Current member NCBI NM_001256385.2 NP_001243314.1 Accepted alive Link to Nucleotide Sequence:NM_001256385.2Link to Protein Sequence:NP_001243314.1Re-query CCDS DB by Nucleotide ID:NM_001256385Re-query CCDS DB by Protein ID:NP_001243314Link to BLAST:NP_001243314.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243314.1 339 Q96DD0-2 339 100% 0 0

Chromosomal Locations for CCDS 58014.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 100149368 100149435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100152385 100152524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100155051 100155203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100156172 100156317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100158231 100158367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100159259 100159415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100160466 100160571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100168404 100168516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGACAGAAAATGTGGTTTGTACTGGGGCTGTCAATGCTGTAAAGGAAGTTTGGGAAAAAAGAATAAAGA
AACTCAATGAAGACCTGAAGCGAGAGAAGGAATTTCAACACAAGCTAGTGCGGATCTGGGAAGAACGAGT
AAGCTTAACCAAGCTAAGAGAAAAGGTCACCAGGGAAGATGGAAGAGTCATTTTGAAGATAGAAAAAGAG
GAATGGAAGACCCTCCCTTCTTCTCTGCTGAAACTGAATCAACTACAGGAATGGCAACTTCATAGAACTG
GTTTGCTGAAAATTCCTGAATTCATTGGAAGATTCCAGAACCTCATTGTGTTAGATTTATCTCGAAACAC
AATTTCAGAGATACCACCAGGGATTGGACTGCTTACTAGACTTCAGGAACTGATTCTCAGCTACAACAAA
ATCAAGACTGTCCCCAAGGAACTAAGTAATTGTGCCAGCTTGGAGAAACTAGAACTGGCTGTTAACAGAG
ATATATGTGATCTTCCACAAGAGCTCAGCAATCTGCTAAAACTTACTCACCTTGATCTGAGTATGAACGA
TTTTACTACAATCCCTCTTGCTGTGTTGAACATGCCTGCCCTTGAGTGGCTGGACATGGGAAGCAACAAA
CTTGAACAACTTCCTGATACTATAGAAAGAATGCAAAATCTACATACGTTATGGCTGCAACGAAATGAAA
TAACATGCTTGCCTCAAACAATCAGCAATATGAAAAATCTGGGTACTCTTGTTCTCAGCAACAATAAACT
GCAAGATATTCCAGTATGCATGGAAGAAATGGCAAATCTGAGGTTTGTCAACTTCAGAGACAACCCACTG
AAATTGAAAGTATCACTTCCTCCCAGTGAAGGCACAGATGAAGAAGAGGAACGGGAATTATTTGGCCTTC
AGTTTATGCACACATACATACAAGAGTCACGGAGAAGAGCAGCTCTTCAGTTTTGTGTTTGTCATGGACA
GATTCTGACAATATATACATGTATGGCTCTGGAAATTTGA

Translation (339 aa):
MTENVVCTGAVNAVKEVWEKRIKKLNEDLKREKEFQHKLVRIWEERVSLTKLREKVTREDGRVILKIEKE
EWKTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNK
IKTVPKELSNCASLEKLELAVNRDICDLPQELSNLLKLTHLDLSMNDFTTIPLAVLNMPALEWLDMGSNK
LEQLPDTIERMQNLHTLWLQRNEITCLPQTISNMKNLGTLVLSNNKLQDIPVCMEEMANLRFVNFRDNPL
KLKVSLPPSEGTDEEEERELFGLQFMHTYIQESRRRAALQFCVCHGQILTIYTCMALEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH