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Report for CCDS58001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58001.1 Public Homo sapiens 1 BTF3L4 24 110 108 CCDS HistoryNCBI Gene:91408Re-query CCDS DB by CCDS ID:58001.1Re-query CCDS DB by GeneID:91408See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489308.6 ENSP00000434824.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489308.6Link to Ensembl Protein Viewer:ENSP00000434824.1Re-query CCDS DB by Nucleotide ID:ENST00000489308Re-query CCDS DB by Protein ID:ENSP00000434824
Original member Current member NCBI NM_001243767.2 NP_001230696.1 Accepted alive Link to Nucleotide Sequence:NM_001243767.2Link to Protein Sequence:NP_001230696.1Re-query CCDS DB by Nucleotide ID:NM_001243767Re-query CCDS DB by Protein ID:NP_001230696Link to BLAST:NP_001230696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230696.1 78 Q96K17-3 78 100% 0 0

Chromosomal Locations for CCDS 58001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52059848 52059901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52064825 52064938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52086112 52086171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52086712 52086720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCCGGATAGGGGGCAAGGGTACAGCTCGCAGAA
AGAAGAAGGTGGTACATAGAACAGCCACAGCTGATGACAAAAAGCTTCAGAGTTCTCTAAAAAAACTGGC
TGTGAATAATATAGCTGGTATTGAAGAGTCTTGGACAGTAAAGCACCAAAACCAGAAGACATTGATGAGG
AAGATGATGATGTTCCAGATCTTGTAG

Translation (78 aa):
MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEESWTVKHQNQKTLMR
KMMMFQIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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