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Report for CCDS57976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57976.1 Public Homo sapiens 1 NBPF3 24 110 108 CCDS HistoryNCBI Gene:84224Re-query CCDS DB by CCDS ID:57976.1Re-query CCDS DB by GeneID:84224See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342104.9 ENSP00000340336.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342104.9Link to Ensembl Protein Viewer:ENSP00000340336.5Re-query CCDS DB by Nucleotide ID:ENST00000342104Re-query CCDS DB by Protein ID:ENSP00000340336
Original member Current member NCBI NM_001256416.4 NP_001243345.1 Accepted alive Link to Nucleotide Sequence:NM_001256416.4Link to Protein Sequence:NP_001243345.1Re-query CCDS DB by Nucleotide ID:NM_001256416Re-query CCDS DB by Protein ID:NP_001243345Link to BLAST:NP_001243345.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243345.1 621 Q9H094-3 621 100% 0 0

Chromosomal Locations for CCDS 57976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21445087 21445219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21468688 21468897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21470632 21470734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21471569 21471783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21472843 21472915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21473380 21473585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21474900 21474951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21478069 21478196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21479349 21479400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21480051 21480223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21480930 21480981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21481597 21481769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21482484 21482535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21483143 21483386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGCCACTGACTCCCACTGTCCAGGGCTTCCAGTGGACTCTCCGAGGCCCTGATGTAGAAACTTCCCCAT
TCGGTGCACCAAGAGCAGCCTCACATGGTGTGGGCCGACATCAAGAGCTGCGAGATCCAACAGTCCCTGG
CCCCACCTCTTCTGCCACAAACGTCAGCATGGTGGTATCTGCCGGCCCTTGGTCCGGTGAGAAGGCAGAG
ATGAACATTCTAGAAATCAACAAGAAATCGCGCCCCCAGCTGGCAGAGAACAAACAGCAGTTCAGAAACC
TCAAACAGAAATGTCTTGTAACTCAAGTGGCCTACTTCCTGGCCAACCGGCAAAATAATTACGACTATGA
AGACTGCAAAGACCTCATAAAATCTATGCTGAGGGATGAGCGGCTGCTCACAGAAGAGAAGCTTGCAGAG
GAGCTCGGGCAAGCTGAGGAGCTCAGGCAATATAAAGTCCTGGTTCACTCTCAGGAACGAGAGCTGACCC
AGTTAAGGGAGAAGTTACAGGAAGGGAGAGATGCCTCCCGCTCATTGAATCAGCATCTCCAGGCCCTCCT
CACTCCGGATGAGCCGGACAACTCCCAGGGACGGGACCTCCGAGAACAGCTGGCTGAGGGATGTAGGCTG
GCACAGCACCTCGTCCAAAAGCTCAGCCCAGAAAATGATGACGATGAGGATGAAGATGTTAAAGTTGAGG
AGGCTGAGAAAGTACAGGAATTATATGCCCCCAGGGAGGTGCAGAAGGCTGAAGAAAAGGAAGTCCCTGA
GGACTCACTGGAGGAGTGTGCCATCACTTGTTCAAATAGCCACCACCCTTGTGAGTCCAACCAGCCTTAC
GGGAACACCAGAATCACATTTGAGGAAGACCAAGTCGACTCAACTCTCATTGACTCATCCTCTCATGATG
AATGGTTGGATGCTGTATGCATTATCCCAGAAAATGAAAGTGATCATGAGCAAGAGGAAGAAAAAGGGCC
AGTGTCTCCCAGATCATCTGGAAGGTTTTGTTGTCTAATCTCTGTTGGTTATATCTTCTGTCATCCCTGT
CCTGCCTGGCTCATCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAGGAGTCCTGGGATGAAG
GACATTGGTGTGATCAAGTGAAAAAGGAGGACCAAGAGGCCACAAGTCCCAGGCTCAGCAGGGAGCTGCT
GGATGAGAAAGAGCCTGAAGTCTTGCAGGACTCACTGGATAGATTTTATTCAACTCCTTTTGAGTACCTG
GAACTGCCTGACTTATGCCAGCCCTACAGAAGTGACTTTTACTCATTGCAGGAACAACACCTTGGCTTGG
CTCTTGACTTGGACAGAATGAAAAAGGACCAAGAAGAGGAAGAAGACCAAGGCCCACCATGCCCCAGGCT
CAGCAGAGAGCTGCCGGAGGTAGTAGAGCCTGAGGACTTGCAGGACTCACTGGATAGATGGTATTCGACT
CCTTTCAGTTATCCAGAACTGCCTGATTCATGCCAGCCCTACGGAAGTTGCTTTTACTCATTGGAGGAAG
AACACGTTGGCTTTTCTCTTGACGTGGATGAAATTGAAAAGTACCAAGAAGGGGAAGAAGATCAAAAGCC
ACCATGCCCCAGGCTCAACGAGGTGCTGATGGAAGCAGAAGAGCCTGAAGTCTTGCAGGACTCACTGGAT
AGATGTTATTCGACTACTTCAACTTACTTTCAACTACATGCCTCATTCCAGCAGTATAGAAGTGCCTTTT
ACTCATTTGAGGAACAGGACGTCAGCTTGGCCCTTGACGTGGACAATAGGTTTTTTACTTTGACAGTGAT
AAGGCACCACCTGGCCTTCCAGATGGGAGTCATATTCCCACACTAA

Translation (621 aa):
MPLTPTVQGFQWTLRGPDVETSPFGAPRAASHGVGRHQELRDPTVPGPTSSATNVSMVVSAGPWSGEKAE
MNILEINKKSRPQLAENKQQFRNLKQKCLVTQVAYFLANRQNNYDYEDCKDLIKSMLRDERLLTEEKLAE
ELGQAEELRQYKVLVHSQERELTQLREKLQEGRDASRSLNQHLQALLTPDEPDNSQGRDLREQLAEGCRL
AQHLVQKLSPENDDDEDEDVKVEEAEKVQELYAPREVQKAEEKEVPEDSLEECAITCSNSHHPCESNQPY
GNTRITFEEDQVDSTLIDSSSHDEWLDAVCIIPENESDHEQEEEKGPVSPRSSGRFCCLISVGYIFCHPC
PAWLIRNLQESEEEEAPQESWDEGHWCDQVKKEDQEATSPRLSRELLDEKEPEVLQDSLDRFYSTPFEYL
ELPDLCQPYRSDFYSLQEQHLGLALDLDRMKKDQEEEEDQGPPCPRLSRELPEVVEPEDLQDSLDRWYST
PFSYPELPDSCQPYGSCFYSLEEEHVGFSLDVDEIEKYQEGEEDQKPPCPRLNEVLMEAEEPEVLQDSLD
RCYSTTSTYFQLHASFQQYRSAFYSFEEQDVSLALDVDNRFFTLTVIRHHLAFQMGVIFPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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