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Report for CCDS5791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5791.1 Public Homo sapiens 7 SPAM1 24 110 108 CCDS HistoryNCBI Gene:6677Re-query CCDS DB by CCDS ID:5791.1Re-query CCDS DB by GeneID:6677See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5791.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223028.11 ENSP00000223028.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000223028.11Link to Ensembl Protein Viewer:ENSP00000223028.7Re-query CCDS DB by Nucleotide ID:ENST00000223028Re-query CCDS DB by Protein ID:ENSP00000223028
Original member Current member EBI ENST00000439500.5 ENSP00000402123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439500.5Link to Ensembl Protein Viewer:ENSP00000402123.1Re-query CCDS DB by Nucleotide ID:ENST00000439500Re-query CCDS DB by Protein ID:ENSP00000402123
Original member Current member EBI ENST00000460182.5 ENSP00000417934.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000460182.5Link to Ensembl Protein Viewer:ENSP00000417934.1Re-query CCDS DB by Nucleotide ID:ENST00000460182Re-query CCDS DB by Protein ID:ENSP00000417934
Original member Current member EBI ENST00000682466.1 ENSP00000508393.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682466.1Link to Ensembl Protein Viewer:ENSP00000508393.1Re-query CCDS DB by Nucleotide ID:ENST00000682466Re-query CCDS DB by Protein ID:ENSP00000508393
Original member Current member NCBI NM_001174044.2 NP_001167515.1 Accepted alive Link to Nucleotide Sequence:NM_001174044.2Link to Protein Sequence:NP_001167515.1Re-query CCDS DB by Nucleotide ID:NM_001174044Re-query CCDS DB by Protein ID:NP_001167515Link to BLAST:NP_001167515.1
Original member Current member NCBI NM_001174045.2 NP_001167516.1 Accepted alive Link to Nucleotide Sequence:NM_001174045.2Link to Protein Sequence:NP_001167516.1Re-query CCDS DB by Nucleotide ID:NM_001174045Re-query CCDS DB by Protein ID:NP_001167516Link to BLAST:NP_001167516.1
Original member Current member NCBI NM_001174046.2 NP_001167517.1 Accepted alive Link to Nucleotide Sequence:NM_001174046.2Link to Protein Sequence:NP_001167517.1Re-query CCDS DB by Nucleotide ID:NM_001174046Re-query CCDS DB by Protein ID:NP_001167517Link to BLAST:NP_001167517.1
Original member Current member NCBI NM_153189.3 NP_694859.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153189.3Link to Protein Sequence:NP_694859.1Re-query CCDS DB by Nucleotide ID:NM_153189Re-query CCDS DB by Protein ID:NP_694859Link to BLAST:NP_694859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167515.1 509 P38567-1 509 100% 0 0
NP_001167516.1 509 P38567-1 509 100% 0 0
NP_001167517.1 509 P38567-1 509 100% 0 0
NP_694859.1 509 P38567-1 509 100% 0 0

Chromosomal Locations for CCDS 5791.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 123953571 123954524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123954997 123955086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123959484 123959969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGGAGTGCTAAAATTCAAGCACATCTTTTTCAGAAGCTTTGTTAAATCAAGTGGAGTATCCCAGATAG
TTTTCACCTTCCTTCTGATTCCATGTTGCTTGACTCTGAATTTCAGAGCACCTCCTGTTATTCCAAATGT
GCCTTTCCTCTGGGCCTGGAATGCCCCAAGTGAATTTTGTCTTGGAAAATTTGATGAGCCACTAGATATG
AGCCTCTTCTCTTTCATAGGAAGCCCCCGAATAAACGCCACCGGGCAAGGTGTTACAATATTTTATGTTG
ATAGACTTGGCTACTATCCTTACATAGATTCAATCACAGGAGTAACTGTGAATGGAGGAATCCCCCAGAA
GATTTCCTTACAAGACCATCTGGACAAAGCTAAGAAAGACATTACATTTTATATGCCAGTAGACAATTTG
GGAATGGCTGTTATTGACTGGGAAGAATGGAGACCCACTTGGGCAAGAAACTGGAAACCTAAAGATGTTT
ACAAGAATAGGTCTATTGAATTGGTTCAGCAACAAAATGTACAACTTAGTCTCACAGAGGCCACTGAGAA
AGCAAAACAAGAATTTGAAAAGGCAGGGAAGGATTTCCTGGTAGAGACTATAAAATTGGGAAAATTACTT
CGGCCAAATCACTTGTGGGGTTATTATCTTTTTCCGGATTGTTACAACCATCACTATAAGAAACCCGGTT
ACAATGGAAGTTGCTTCAATGTAGAAATAAAAAGAAATGATGATCTCAGCTGGTTGTGGAATGAAAGCAC
TGCTCTTTACCCATCCATTTATTTGAACACTCAGCAGTCTCCTGTAGCTGCTACACTCTATGTGCGCAAT
CGAGTTCGGGAAGCCATCAGAGTTTCCAAAATACCTGATGCAAAAAGTCCACTTCCGGTTTTTGCATATA
CCCGCATAGTTTTTACTGATCAAGTTTTGAAATTCCTTTCTCAAGATGAACTTGTGTATACATTTGGCGA
AACTGTTGCTCTGGGTGCTTCTGGAATTGTAATATGGGGAACCCTCAGTATAATGCGAAGTATGAAATCT
TGCTTGCTCCTAGACAATTACATGGAGACTATACTGAATCCTTACATAATCAACGTCACACTAGCAGCCA
AAATGTGTAGCCAAGTGCTTTGCCAGGAGCAAGGAGTGTGTATAAGGAAAAACTGGAATTCAAGTGACTA
TCTTCACCTCAACCCAGATAATTTTGCTATTCAACTTGAGAAAGGTGGAAAGTTCACAGTACGTGGAAAA
CCGACACTTGAAGACCTGGAGCAATTTTCTGAAAAATTTTATTGCAGCTGTTATAGCACCTTGAGTTGTA
AGGAGAAAGCTGATGTAAAAGACACTGATGCTGTTGATGTGTGTATTGCTGATGGTGTCTGTATAGATGC
TTTTCTAAAACCTCCCATGGAGACAGAAGAACCTCAAATTTTCTACAATGCTTCACCCTCCACACTATCT
GCCACAATGTTCATTGTTAGTATTTTGTTTCTTATCATTTCTTCTGTAGCGAGTTTGTAA

Translation (509 aa):
MGVLKFKHIFFRSFVKSSGVSQIVFTFLLIPCCLTLNFRAPPVIPNVPFLWAWNAPSEFCLGKFDEPLDM
SLFSFIGSPRINATGQGVTIFYVDRLGYYPYIDSITGVTVNGGIPQKISLQDHLDKAKKDITFYMPVDNL
GMAVIDWEEWRPTWARNWKPKDVYKNRSIELVQQQNVQLSLTEATEKAKQEFEKAGKDFLVETIKLGKLL
RPNHLWGYYLFPDCYNHHYKKPGYNGSCFNVEIKRNDDLSWLWNESTALYPSIYLNTQQSPVAATLYVRN
RVREAIRVSKIPDAKSPLPVFAYTRIVFTDQVLKFLSQDELVYTFGETVALGASGIVIWGTLSIMRSMKS
CLLLDNYMETILNPYIINVTLAAKMCSQVLCQEQGVCIRKNWNSSDYLHLNPDNFAIQLEKGGKFTVRGK
PTLEDLEQFSEKFYCSCYSTLSCKEKADVKDTDAVDVCIADGVCIDAFLKPPMETEEPQIFYNASPSTLS
ATMFIVSILFLIISSVASL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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