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Report for CCDS57621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57621.1 Public Mus musculus 8 Spcs3 23 108 98 CCDS HistoryNCBI Gene:76687Re-query CCDS DB by CCDS ID:57621.1Re-query CCDS DB by GeneID:76687See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067476.8 ENSMUSP00000136527.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067476.8Link to Ensembl Protein Viewer:ENSMUSP00000136527.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000067476Re-query CCDS DB by Protein ID:ENSMUSP00000136527
Original member Current member NCBI NM_029701.1 NP_083977.1 Accepted alive Link to Nucleotide Sequence:NM_029701.1Link to Protein Sequence:NP_083977.1Re-query CCDS DB by Nucleotide ID:NM_029701Re-query CCDS DB by Protein ID:NP_083977Link to BLAST:NP_083977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083977.1 180 Q6ZWQ7 180 100% 0 0

Chromosomal Locations for CCDS 57621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 54523263 54523395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54524941 54525056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54526451 54526527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54528342 54528415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54529763 54529905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAACACCGTCCTGTCGCGCGCGAACTCCCTGTTCGCCTTCTCGCTGAGCGTGATGGCGGCGCTCACCT
TCGGCTGCTTCATCACCACCGCCTTCAAAGACAGGAGCGTCCCAGTGCGGCTGCACGTCTCGCGGATCAT
GCTAAAAAATGTAGAAGACTTCACGGGCCCTAGAGAAAGAAGTGACCTGGGATTCATCACATTTGATATA
ACAGCTGATCTAGAGAATATATTTGATTGGAATGTTAAGCAGTTATTTCTTTATTTATCTGCAGAGTATT
CAACAAAAAATAATGCTCTGAACCAAGTTGTCCTTTGGGACAAAATTGTTTTGAGAGGTGATAATCCGAA
GCTACTTTTGAAAGATATGAAGACAAAGTATTTCTTCTTTGACGATGGAAATGGCCTCAAGGGAAACAGG
AATGTCACTCTGACGCTCTCCTGGAACGTTGTACCAAACGCTGGAATTCTACCTCTTGTGACAGGATCGG
GACATGTGTCTGTGCCATTTCCAGATACATACGAAATAACCAAGAGTTACTAA

Translation (180 aa):
MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDI
TADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNR
NVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEITKSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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