NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57606.1 Public Mus musculus 8 F10 23 108 98 CCDS HistoryNCBI Gene:14058Re-query CCDS DB by CCDS ID:57606.1Re-query CCDS DB by GeneID:14058See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033821.10 ENSMUSP00000033821.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033821.10Link to Ensembl Protein Viewer:ENSMUSP00000033821.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033821Re-query CCDS DB by Protein ID:ENSMUSP00000033821
Original member Current member NCBI NM_001242368.1 NP_001229297.1 Accepted alive Link to Nucleotide Sequence:NM_001242368.1Link to Protein Sequence:NP_001229297.1Re-query CCDS DB by Nucleotide ID:NM_001242368Re-query CCDS DB by Protein ID:NP_001229297Link to BLAST:NP_001229297.1

Chromosomal Locations for CCDS 57606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13037802 13037907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13039493 13039653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13045076 13045100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13046046 13046159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13048169 13048300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13050626 13050861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13053356 13053473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13055293 13055882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCCTGTCACAGCCACTGCCGTCCTTGACCACACCATGGGGAGCCCGGTGCAACTCAGCCTGCTCTGTG
TTGTCCTGGCCAGCCTCCTGCTCCCTGGGAAAGGTGTGTTTATTAACCGGGAACGTGCCAACAATGTCCT
GGCGAGGACTCGGAGGGCAAACTCATTTTTTGAAGAGTTCAAGAAAGGAAATCTGGAAAGAGAGTGTATG
GAAGAAATTTGTTCTTATGAAGAGGTCCGTGAAATCTTCGAGGACGACGAGAAGACGAAAGAATACTGGA
CCAAATATAAAGACGGCGACCAGTGTGAAAGCAGCCCTTGCCAGAACCAAGGAGCGTGTCGAGATGGCAT
CGGGGGTTACACGTGCACCTGCTCGGAGGGATTTGAAGGCAAAAACTGTGAGCTCTTTGTTCGGAAACTC
TGCCGCCTAGACAACGGAGACTGTGACCAGTTCTGCAGAGAAGAGCAGAACTCAGTGGTGTGCTCCTGCG
CCAGCGGTTACTTCCTGGGTAATGATGGCAAGTCTTGCATCTCCACAGCTCCCTTCCCCTGTGGAAAAAT
CACTACAGGACGTAGGAAGAGGTCTGTGGCCCTAAACACCAGCGACAGTGAGCTTGACCTTGAAGACGCC
CTGCTTGATGAGGATTTCCTGTCCCCTACGGAGAATCCTATTGAACTGCTCAACCTCAACGAGACACAGC
CTGAGAGGAGCAGCGATGACCTTGTTCGGATTGTGGGTGGCCGGGAATGCAAGGATGGAGAATGTCCCTG
GCAGGCTCTGCTCATTAACGAAGACAATGAAGGGTTCTGTGGGGGCACCATCTTGAATGAGTTCTACATC
CTCACTGCTGCCCACTGTCTCCATCAGGCCAGGCGATTCAAGGTGAGGGTAGGTGATCGGAACACAGAGA
AGGAAGAAGGCAACGAGATGGTGCACGAGGTGGACGTGGTCATTAAGCACAACAAGTTTCAGAGGGACAC
CTACGACTATGATATCGCCGTGCTGAGGCTGAAGACTCCCATCACGTTCCGGATGAACGTGGCCCCTGCC
TGCCTGCCTCAGAAAGACTGGGCCGAGTCCACACTGATGACACAGAAGACGGGCATCGTGAGCGGGTTTG
GACGCACGCATGAGAAGGGCCGCCAGTCGAACATCCTGAAGATGCTGGAGGTACCCTACGTGGATCGCAA
CACCTGCAAGCTCTCCACCAGCTTCAGCATCACACAGAATATGTTCTGTGCGGGCTATGAGGCCAAGTTA
GAGGATGCCTGCCAGGGGGACAGTGGTGGCCCCCATGTCACACGGTTCAAAAATACCTACTATGTGACCG
GCATTGTCAGCTGGGGAGAGGGGTGTGCAAGGAAAGGGAAATATGGCATCTACACAAAGGTCACGACCTT
CCTCAAGTGGATTGACAGGTCCATGAAAGCCAGGGTGGGACCCACAGCCGAGACCCCAAGGACAGCAGGT
CCGCCCAATTAA

Translation (493 aa):
MPVTATAVLDHTMGSPVQLSLLCVVLASLLLPGKGVFINRERANNVLARTRRANSFFEEFKKGNLERECM
EEICSYEEVREIFEDDEKTKEYWTKYKDGDQCESSPCQNQGACRDGIGGYTCTCSEGFEGKNCELFVRKL
CRLDNGDCDQFCREEQNSVVCSCASGYFLGNDGKSCISTAPFPCGKITTGRRKRSVALNTSDSELDLEDA
LLDEDFLSPTENPIELLNLNETQPERSSDDLVRIVGGRECKDGECPWQALLINEDNEGFCGGTILNEFYI
LTAAHCLHQARRFKVRVGDRNTEKEEGNEMVHEVDVVIKHNKFQRDTYDYDIAVLRLKTPITFRMNVAPA
CLPQKDWAESTLMTQKTGIVSGFGRTHEKGRQSNILKMLEVPYVDRNTCKLSTSFSITQNMFCAGYEAKL
EDACQGDSGGPHVTRFKNTYYVTGIVSWGEGCARKGKYGIYTKVTTFLKWIDRSMKARVGPTAETPRTAG
PPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH