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Report for CCDS57435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57435.1 Public Mus musculus 6 C87436 23 108 98 CCDS HistoryNCBI Gene:232196Re-query CCDS DB by CCDS ID:57435.1Re-query CCDS DB by GeneID:232196See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113698.7 ENSMUSP00000109328.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113698.7Link to Ensembl Protein Viewer:ENSMUSP00000109328.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113698Re-query CCDS DB by Protein ID:ENSMUSP00000109328
Original member Current member NCBI NM_001243741.1 NP_001230670.1 Accepted alive Link to Nucleotide Sequence:NM_001243741.1Link to Protein Sequence:NP_001230670.1Re-query CCDS DB by Nucleotide ID:NM_001243741Re-query CCDS DB by Protein ID:NP_001230670Link to BLAST:NP_001230670.1
Original member Current member NCBI NM_001364558.1 NP_001351487.1 Accepted alive Link to Nucleotide Sequence:NM_001364558.1Link to Protein Sequence:NP_001351487.1Re-query CCDS DB by Nucleotide ID:NM_001364558Re-query CCDS DB by Protein ID:NP_001351487Link to BLAST:NP_001351487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230670.1 564 Q8R3C1-2 564 100% 0 0
NP_001351487.1 564 Q8R3C1-2 564 100% 0 0

Chromosomal Locations for CCDS 57435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86445446 86446268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86447341 86447421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86449761 86449865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86453609 86453713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86457816 86457923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86462581 86462681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86465801 86465963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86469746 86469954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGAACCAAACTCTCAGAGGACTAAAGTCCCAGCTTTCTTATCTGACTTGGGGAAGGCCACACTGAGGG
GAATCAGGAAGTGTCCCCGATGTGGTACGTTCAATGGAACCCGTGGGTTGAGCTGTAAGAACAAGACATG
TGGAACCATATTTCGCTATGGTGCCCGAAAGCAGCCTAGCATTGAAGCTGTCAAAATCATCACCGGCTCT
GATCTACAGGTCTACTCTGTGCGACAGAGAGACCGAGGCCCCGACTACCGATGCTTCGTGGAGCTCGGTG
TTTCGGAGACTGCAATCCAGACCGTGGATGGTACAATCATCACTCAGCTGAGCTCCGGCCGATGTTACGT
CCCCTCGTGTTTGAAAGCTGCCACTCAAGGCATTGTGGAAAACCAGTGTCAACACATCAAGCTAGCGGTG
ACCTGCCAGGCGGAGGCCACCCCTCTGACCCTGAAGAGCTCAGTCCTGAATGCTCTGCAGGCTGCCCCAG
AAACCAAGCAGAGCCTCTGGCAGCTGGCCACCGAGCCCACGGGGCCCCTGGTACAGAGAGTCACTAAAAA
CATTATGGTGGTGAAATGCAAAGCCAGCCAGAAGCACAACTTGGGCTACTTGCACGCGTCCTTCATGCAG
AAGATCAGCTCCAGAAGCTTGCCGGAGCGCCGCTTCTTCTGCTCCTGCCAGACTCTGAGGCCACACAAGT
CCAGCGTCCCCAAGGCTGAGGCAGCCCCAAAGTGCATCCATTTCTTTGCTTGTCTCTGTGCCTTTGCCAG
CGATGAGACATTGGCTCAGGAGTTCTCGGACTTTCTGAACTTCGATGCCAGTGGCTGCCATGCAGAGTCA
TCTGTCTCAGCTTGTGAGTCTGCTGCCTCTAAGCCCCGGAAGAGGAAGAAGGATGAAGTGTCTGGTGCAC
AGGTGAACAGCTCACTGATGCCGCAAGATGCAGTAAACAGCAATCTAAGGAAGAGTGGCCTGAAAAGGCC
TGTGGTTACGTCATCATTGAAAAGGCACGTCTGTGGTCAGCTGTTAGATGAGGCACAAGTGACCCTGTCC
TTCCAAGACTGGCTGGCCAGTGTCACAGAGCGCATCCATCAAACCATGCACTATCAGTTTGATGGCAAAC
CAGAACCCCTGGTGTTCCACATTCCTCAGTCCTTTTTTGATGCCTTGCAACAGAGAATATCCATAGGAAG
TGCAAAGAAGCGGCTCCCCAACTCCACTACAGCTTTTGTTCGGAAAGATGCCTTGCCACTGGGAACCTTT
TCCAAGTACACCTGGCATATCACCAATATTCTGCAAGTCAAACAAATCTTAGACACCCCAGAGATGCCCC
TGGAAATCACACGTAGCTTTATCCAGAACCGGGATGGAACTTACGAGCTGTTTAAATGCCCCAAAGTGGA
AGTAGAGAACATAGCGGAAAGCTACGGCCGCATAGAGAAGCAGCCTGTGCTGAGACCTTTGGAGCTGAAA
ACCTTCCTCAAAGTTGGTAACACTTCCCCAGATCAAAAGGAGCCAACGCCCTTTATCATTGAGTGGATCC
CAGATATCCTCCCACAGTCCAAGATTGGTGAGCTTCGAATCAAGTTTGAGTATGGTCACCACCGGAATGG
ACATGTGGCTGACTACCAGGACCCAAGGCCACCCATGGACCAACCTTTGGAGCTGGCCCCTCTGACTACT
ATCACTTTCCCTTGA

Translation (564 aa):
MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTFNGTRGLSCKNKTCGTIFRYGARKQPSIEAVKIITGS
DLQVYSVRQRDRGPDYRCFVELGVSETAIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAV
TCQAEATPLTLKSSVLNALQAAPETKQSLWQLATEPTGPLVQRVTKNIMVVKCKASQKHNLGYLHASFMQ
KISSRSLPERRFFCSCQTLRPHKSSVPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGCHAES
SVSACESAASKPRKRKKDEVSGAQVNSSLMPQDAVNSNLRKSGLKRPVVTSSLKRHVCGQLLDEAQVTLS
FQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTF
SKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVENIAESYGRIEKQPVLRPLELK
TFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPMDQPLELAPLTT
ITFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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