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Report for CCDS57397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57397.1 Public Mus musculus 5 Sun1 23 108 98 CCDS HistoryNCBI Gene:77053Re-query CCDS DB by CCDS ID:57397.1Re-query CCDS DB by GeneID:77053See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110883.8 ENSMUSP00000106507.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110883.8Link to Ensembl Protein Viewer:ENSMUSP00000106507.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110883Re-query CCDS DB by Protein ID:ENSMUSP00000106507
Original member Current member NCBI NM_001256117.1 NP_001243046.1 Accepted alive Link to Nucleotide Sequence:NM_001256117.1Link to Protein Sequence:NP_001243046.1Re-query CCDS DB by Nucleotide ID:NM_001256117Re-query CCDS DB by Protein ID:NP_001243046Link to BLAST:NP_001243046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243046.1 790 Q9D666-2 790 100% 0 0

Chromosomal Locations for CCDS 57397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139215178 139215254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139223594 139223785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139225263 139225447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139226578 139226604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139226706 139226885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139233471 139233569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139233901 139233994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139234515 139234573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139234687 139234832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139235492 139235731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139236649 139236735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139237879 139237922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139238828 139238939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139241233 139241487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139241943 139242027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139245329 139245444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139246693 139246860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139248070 139248162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139248418 139248531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGGACTTTTCTCGGCTGCACACGTACACCCCACCCCAGTGTGTGCCGGAGAACACTGGCTACACTTACG
CACTCAGTTCTAGTTACTCGTCGGATGCTCTGGATTTTGAAACTGAGCACAAGTTGGAACCTGTATTTGA
CTCTCCAAGGATGTCCCGCCGCAGCTTGCGTCTGGTCACAACAGCTTCGTACAGCAGTGGGGACAGCCAG
GCTATTGATTCGCACATTAGCACCAGCAGGGCCACCCCCGCCAAGGGGAGAGAAACCAGGACAGTCAAAC
AGAGAAGAAGTGCAAGCAAGCCAGCTTTTAGTATCAACCACCTGTCAGGGAAGGGCTTGTCCTCGAGCAC
AAGCCATGACAGCTCTTGCAGCCTGCGGAGTGCCACGGTGCTGCGGCACCCTGTGCTAGATGAGTCCCTG
ATTCGTGAGCAGACCAAAGTGGACCACTTCTGGGGTCTCGATGATGATGGTGACCTTAAAGGTGGAAATA
AAGCTGCCACTCAGGGAAATGGTGAACTGGCAGCAGAGGTGGCGAGCAGCAATGGATACACTTGCCGTGA
CTGCAGGATGCTCTCAGCGCGCACTGACGCACTCACAGCCCACTCTGCCATCCACGGGACCACCTCCAGG
GTGTACTCCAGAGACAGGACTCTCAAACCACGTGACCTCTTGGTTCAAGCACTGCGAAGGACTAGAGCTG
CCGGGTGGTCTGTGGCCGAGGCCGTGTGGTCGGTGCTCTGGCTGGCTGTCTCTGCTCCAGGGAAGGCAGC
CTCGGGAACCTTCTGGTGGCTAGGGAGCGGCTGGTACCAATTTGTTACTTTGATTTCTTGGCTGAATGTC
TTTCTTCTTACCAGGTGCCTTCGAAATATTTGCAAGGTTTTTGTCTTGCTCCTCCCACTCCTACTTTTAC
TAGGTGCTGGTGTCTCCCTGTGGGGCCAGGGAAACTTCTTCTCACTCCTACCAGTGCTGAACTGGACGGC
CATGCAGCCAACACAGAGGGTGGACGATTCCAAGGGCATGCATAGACCTGGCCCTCTTCCCCCGAGCCCA
CCTCCAAAGGTTGATCACAAGGCTTCCCAGTGGCCTCAGGAGAGTGACATGGGGCAGAAGGTAGCTTCTT
TGAGTGCGCAGTGCCACAACCATGATGAGAGACTTGCAGAGCTGACAGTCCTGCTTCAGAAACTACAGAT
ACGGGTAGACCAAGTGGATGACGGCAGGGAAGGGCTGTCACTGTGGGTCAAGAATGTGGTTGGACAGCAC
CTGCAGGAGATGGGCACCATAGAACCACCTGATGCTAAGACTGACTTCATGACTTTCCACCATGACCATG
AAGTGCGTCTCTCCAACTTGGAAGATGTTCTTAGAAAACTGACAGAAAAATCTGAGGCTATCCAGAAGGA
GCTGGAAGAAACCAAGCTGAAAGCAGGCAGCAGGGATGAAGAGCAGCCCCTCCTTGACCGTGTGCAGCAC
CTAGAACTGGAACTGAACCTGTTGAAGTCACAGCTGTCAGACTGGCAGCATCTGAAGACCAGCTGTGAGC
AGGCTGGGGCCCGCATCCAGGAGACTGTGCAGCTCATGTTCTCTGAGGATCAGCAGGGCGGTTCCCTCGA
GTGGCTATTAGAGAAGCTTTCTTCTCGGTTCGTGAGCAAGGATGAGCTGCAGGTGCTCTTACATGACCTT
GAGCTGAAACTGCTGCAGAATATCACACACCACATCACCGTGACAGGACAGGCCCCGACATCCGAGGCTA
TTGTGTCTGCCGTGAATCAGGCAGGGATTTCAGGAATCACAGAAGCGCAAGCACATATCATTGTGAACAA
TGCTCTGAAGCTGTACTCCCAAGACAAGACGGGGATGGTGGACTTTGCTCTGGAGTCTGGAGGTGGCAGC
ATCCTAAGCACTCGGTGCTCTGAGACCTATGAGACCAAGACGGCACTGCTGAGCCTGTTTGGGGTCCCAC
TGTGGTACTTCTCACAGTCACCTCGAGTGGTGATCCAGCCCGACATCTACCCAGGGAATTGCTGGGCGTT
CAAAGGTTCCCAGGGGTACCTGGTGGTGCGGTTGTCCATGAAGATCTACCCAACCACATTCACCATGGAA
CACATTCCAAAGACACTATCACCCACTGGTAACATCTCCAGTGCCCCCAAAGACTTTGCAGTCTATGGAC
TGGAAACGGAGTATCAAGAAGAGGGGCAGCCTCTGGGACGGTTCACCTATGACCAGGAAGGAGACTCACT
CCAGATGTTCCACACACTGGAAAGACCTGACCAAGCCTTCCAGATAGTAGAGCTCCGGGTCCTGTCCAAC
TGGGGCCACCCTGAGTACACTTGCCTCTACCGGTTCCGAGTCCACGGAGAGCCCATCCAGTAG

Translation (790 aa):
MDFSRLHTYTPPQCVPENTGYTYALSSSYSSDALDFETEHKLEPVFDSPRMSRRSLRLVTTASYSSGDSQ
AIDSHISTSRATPAKGRETRTVKQRRSASKPAFSINHLSGKGLSSSTSHDSSCSLRSATVLRHPVLDESL
IREQTKVDHFWGLDDDGDLKGGNKAATQGNGELAAEVASSNGYTCRDCRMLSARTDALTAHSAIHGTTSR
VYSRDRTLKPRDLLVQALRRTRAAGWSVAEAVWSVLWLAVSAPGKAASGTFWWLGSGWYQFVTLISWLNV
FLLTRCLRNICKVFVLLLPLLLLLGAGVSLWGQGNFFSLLPVLNWTAMQPTQRVDDSKGMHRPGPLPPSP
PPKVDHKASQWPQESDMGQKVASLSAQCHNHDERLAELTVLLQKLQIRVDQVDDGREGLSLWVKNVVGQH
LQEMGTIEPPDAKTDFMTFHHDHEVRLSNLEDVLRKLTEKSEAIQKELEETKLKAGSRDEEQPLLDRVQH
LELELNLLKSQLSDWQHLKTSCEQAGARIQETVQLMFSEDQQGGSLEWLLEKLSSRFVSKDELQVLLHDL
ELKLLQNITHHITVTGQAPTSEAIVSAVNQAGISGITEAQAHIIVNNALKLYSQDKTGMVDFALESGGGS
ILSTRCSETYETKTALLSLFGVPLWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMKIYPTTFTME
HIPKTLSPTGNISSAPKDFAVYGLETEYQEEGQPLGRFTYDQEGDSLQMFHTLERPDQAFQIVELRVLSN
WGHPEYTCLYRFRVHGEPIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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