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Report for CCDS5736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5736.1 Public Homo sapiens 7 SYPL1 24 110 108 CCDS HistoryNCBI Gene:6856Re-query CCDS DB by CCDS ID:5736.1Re-query CCDS DB by GeneID:6856See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5736.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000011473.6 ENSP00000011473.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000011473.6Link to Ensembl Protein Viewer:ENSP00000011473.2Re-query CCDS DB by Nucleotide ID:ENST00000011473Re-query CCDS DB by Protein ID:ENSP00000011473
Original member Current member NCBI NM_006754.5 NP_006745.1 Accepted alive Link to Nucleotide Sequence:NM_006754.5Link to Protein Sequence:NP_006745.1Re-query CCDS DB by Nucleotide ID:NM_006754Re-query CCDS DB by Protein ID:NP_006745Link to BLAST:NP_006745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006745.1 259 Q16563-1 259 100% 0 0

Chromosomal Locations for CCDS 5736.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 106091805 106091939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106092949 106093137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106097690 106097897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106099158 106099282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106112140 106112211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106112479 106112529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGCGCCCAACATCTACTTGGTTCGCCAGCGGATCAGTCGACTCGGCCAGAGGATGTCCGGCTTCCAGA
TCAACCTCAACCCGCTCAAGGAGCCACTCGGCTTCATCAAGGTCCTCGAGTGGATTGCTTCTATCTTTGC
TTTTGCCACCTGTGGAGGTTTTAAGGGCCAAACAGAAATTCAAGTGAATTGTCCTCCTGCAGTTACTGAG
AATAAAACTGTTACAGCTACTTTTGGTTATCCATTCAGGTTGAATGAGGCATCATTTCAGCCACCTCCAG
GTGTAAACATATGTGATGTAAATTGGAAAGATTACGTCCTCATAGGCGATTACTCTTCTTCTGCACAATT
CTATGTTACCTTTGCAGTCTTTGTGTTCCTGTACTGCATTGCTGCCCTTCTGCTTTATGTTGGCTACACG
AGTCTGTATCTGGATAGTCGTAAACTTCCTATGATAGACTTTGTTGTTACACTTGTTGCCACTTTTTTGT
GGTTGGTGAGCACTTCAGCCTGGGCTAAAGCTCTGACAGATATTAAAATAGCTACTGGTCACAATATTAT
TGATGAACTTCCGCCTTGTAAGAAGAAAGCAGTACTGTGTTACTTTGGCTCTGTGACCAGTATGGGATCC
CTAAATGTATCTGTGATATTTGGCTTTCTAAATATGATACTCTGGGGAGGAAATGCTTGGTTTGTGTACA
AGGAGACCAGCCTACACAGTCCATCAAATACATCTGCCCCTCATAGCCAAGGAGGTATTCCACCTCCTAC
CGGAATATAA

Translation (259 aa):
MAPNIYLVRQRISRLGQRMSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTE
NKTVTATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGYT
SLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATGHNIIDELPPCKKKAVLCYFGSVTSMGS
LNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGIPPPTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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