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Report for CCDS57315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57315.1 Public Mus musculus 4 Camta1 23 108 98 CCDS HistoryNCBI Gene:100072Re-query CCDS DB by CCDS ID:57315.1Re-query CCDS DB by GeneID:100072See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153938.2 ENSMUSP00000134684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153938.2Link to Ensembl Protein Viewer:ENSMUSP00000134684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153938Re-query CCDS DB by Protein ID:ENSMUSP00000134684
Original member Current member EBI ENSMUST00000214673.1 ENSMUSP00000149268.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214673.1Link to Ensembl Protein Viewer:ENSMUSP00000149268.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214673Re-query CCDS DB by Protein ID:ENSMUSP00000149268
Original member Current member NCBI NM_001195565.1 NP_001182494.1 Accepted alive Link to Nucleotide Sequence:NM_001195565.1Link to Protein Sequence:NP_001182494.1Re-query CCDS DB by Nucleotide ID:NM_001195565Re-query CCDS DB by Protein ID:NP_001182494Link to BLAST:NP_001182494.1

Chromosomal Locations for CCDS 57315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151792494 151792502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151830418 151830536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151835814 151835883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151861625 151861669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (243 nt):
ATGTGGCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGAGCGTTTCCCAAAGTGTATTCTGCG
GAACTAGCACCTACTGTGTTCTCAACACCGTGCCACCTATAGAAGATGATCATGGGAACAGCAATAGTAG
TCATGTAAAAATCTTTTTACCGAAAAAGCTGCTTGAATGTCTGCCGAAATGTTCAAGTTTACCCAAAGAG
AGGCACCGCTGGAACACTAATGAGAGATCATGA

Translation (80 aa):
MWRAEGKWLPKTSRKSVSQSVFCGTSTYCVLNTVPPIEDDHGNSNSSHVKIFLPKKLLECLPKCSSLPKE
RHRWNTNERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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