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Report for CCDS57118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57118.1 Public Mus musculus 18 Gypc 23 108 98 CCDS HistoryNCBI Gene:71683Re-query CCDS DB by CCDS ID:57118.1Re-query CCDS DB by GeneID:71683See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174459.1 ENSMUSP00000134317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174459.1Link to Ensembl Protein Viewer:ENSMUSP00000134317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174459Re-query CCDS DB by Protein ID:ENSMUSP00000134317
Original member Current member NCBI NM_001048207.1 NP_001041672.1 Accepted alive Link to Nucleotide Sequence:NM_001048207.1Link to Protein Sequence:NP_001041672.1Re-query CCDS DB by Nucleotide ID:NM_001048207Re-query CCDS DB by Protein ID:NP_001041672Link to BLAST:NP_001041672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041672.1 95 Q78HU7 95 100% 0 0

Chromosomal Locations for CCDS 57118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32530005 32530201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32532734 32532784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32559786 32559825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGAGCAGCCCGGTCAGCAAGCCGCCTCCCGAGCTCCTCGAGCCTAACCCAGGGAAGTCCTACGGCATTA
TGGAGATTGCCATCATTGCAGCTGTGATCACTGCTGTGGCCTTGGTCCTGGTCTGCCTCCTCTTTCTCAT
GCTTCGCTACCTGTACAGGCACAAGGGTACCTACCACACCAATGAGGCCAAAGGCACAGAGTTTGCAGAG
AGTGCTGATGCAGCCCTGCAAAGTGACCCTGCCCTCCAGGATGCTGGGGACACCAGCAAGAAGGAATACT
TTATCTGA

Translation (95 aa):
MSSPVSKPPPELLEPNPGKSYGIMEIAIIAAVITAVALVLVCLLFLMLRYLYRHKGTYHTNEAKGTEFAE
SADAALQSDPALQDAGDTSKKEYFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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