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Report for CCDS57116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57116.1 Public Mus musculus 18 Ss18 23 108 98 CCDS HistoryNCBI Gene:268996Re-query CCDS DB by CCDS ID:57116.1Re-query CCDS DB by GeneID:268996See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092041.10 ENSMUSP00000089673.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092041.10Link to Ensembl Protein Viewer:ENSMUSP00000089673.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092041Re-query CCDS DB by Protein ID:ENSMUSP00000089673
Original member Current member NCBI NM_001161369.1 NP_001154841.1 Accepted alive Link to Nucleotide Sequence:NM_001161369.1Link to Protein Sequence:NP_001154841.1Re-query CCDS DB by Nucleotide ID:NM_001161369Re-query CCDS DB by Protein ID:NP_001154841Link to BLAST:NP_001154841.1

Chromosomal Locations for CCDS 57116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 14627285 14627311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14633543 14633676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14636496 14636618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14640257 14640361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14640956 14641123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14651023 14651244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14655027 14655180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14670309 14670393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14679387 14679463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14682667 14682735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGTCTGTGGCGTTCGCAGCCCCGAGGCAGCGGGGCAAGGGCGAAATCACGCCCGCCGCCATCCAGAAGA
TGCTGGATGAAAACAACCATCTTATTCAGTGTATAATGGACTATCAGAACAAAGGGAAGGCCTCGGAGTG
CTCGCAGTATCAGCAGATATTGCATACAAACCTGGTATACCTTGCTACAATAGCAGACTCTAATCAAAAT
ATGCAGTCTCTCTTACCAGCACCGCCCACACAGACTATGCCAATGGGTCCTGGAGGGATGAGTCAGAGTG
GCCCTCCACCCCCTCCCCGCTCTCACAACATGCCTTCAGATGGAATGGTGGGTGGGGGCCCTCCTGCACC
ACACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACCATATGCCAATGCAGGGACCTGGACCC
AGTCAGCTCAGCATGACAAACAGCTCCATGAATATGCCTTCAAGTAGCCATGGCTCCATGGGAGGTTACA
ACCATTCTGTGCCGTCATCCCAGAGCATGCCCGTGCAGAACCAGATGACAATGAGTCAGGGGCAGCCAAT
GGGAAACTATGGTCCCAGACCAAACATGAATATGCAACCAAATCAAGGGCCGATGATGCACCAGCAGCCT
CCTTCTCAGCAGTACAATATGCCACCTGGAGGGGCACAGCATTACCAAGGACAGCAGGCGCCCATGGGGC
TGATGGGCCAAGTTAACCAAGGCAGTCACATGATGGGCCAGCGACAGATGCCTCCCTACAGACCTCCGCA
ACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTATGGGGACCAATACAGTCATGGTGGACAA
GGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAACTCCCAGTATGGCCAACAGCAAGACG
CTTACCAGGGACCACCTCCACAGCAAGGATACCCACCCCAGCAGCAGCAGTACCCGGGACAGCAGGGATA
CCCAGGGCAGCAGCAGAGCTATGGTCCTTCGCAGGGCGGTCCAGGTCCTCAGTATCCTAATTATCCTCAG
GGTCAAGGTCAGCAGTATGGGGGCTATAGACCAACACAGCCAGGACCACCCCAGCCACCCCAGCAGAGGC
CTTATGGGTACGACCAGGGACAGTATGGAAATTACCAGCAGTGA

Translation (387 aa):
MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHTNLVYLATIADSNQN
MQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGP
SQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQP
PSQQYNMPPGGAQHYQGQQAPMGLMGQVNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQ
GPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQSYGPSQGGPGPQYPNYPQ
GQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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