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Report for CCDS57100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57100.1 Public Mus musculus 17 Mocs1 23 108 98 CCDS HistoryNCBI Gene:56738Re-query CCDS DB by CCDS ID:57100.1Re-query CCDS DB by GeneID:56738See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024797.15 ENSMUSP00000024797.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024797.15Link to Ensembl Protein Viewer:ENSMUSP00000024797.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000024797Re-query CCDS DB by Protein ID:ENSMUSP00000024797
Original member NCBI NM_028464.1 NP_082740.1 Updated not alive Link to Nucleotide Sequence:NM_028464.1Link to Protein Sequence:NP_082740.1Re-query CCDS DB by Nucleotide ID:NM_028464Re-query CCDS DB by Protein ID:NP_082740
Current member NCBI NM_028464.2 NP_082740.1 Accepted alive Link to Nucleotide Sequence:NM_028464.2Link to Protein Sequence:NP_082740.1Re-query CCDS DB by Nucleotide ID:NM_028464Re-query CCDS DB by Protein ID:NP_082740Link to BLAST:NP_082740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082740.1 385 Q5RKZ7-2 385 100% 0 0

Chromosomal Locations for CCDS 57100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49428442 49428564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49433170 49433296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49435095 49435262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49439422 49439586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49449100 49449161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49449435 49449546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49449749 49449861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49450262 49450372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49452211 49452331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49452795 49452850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCGGCGCGGCCTGCGTTCGGAATAGTGCGGCAGCTCCTGAGGTCCAATGCTCGGGGTTGCAGCTCGG
GGGCTCCGGTGACGCAGCCTCGCCCCGGGGAGCCCTCGAGACCTACCAGGGAGGGGCTGTCCCTGAGGCT
CCAGTTCCTCCAGGAGCATGCGGCTCCCTTCTCTGCCTTCCTCACGGACAGCTTTGGCCGACAACATAGT
TACCTGCGGATCTCTCTCACAGAGAAGTGCAACCTCCGATGCCAGTATTGCATGCCCGAGGAGGGTGTGC
CCCTGACCCCCAAAGCTGACCTACTGACCACAGAGGAGATCCTGACCCTTGCCCGCCTCTTTGTGAAGGA
AGGTGTGGACAAGATCCGTCTCACTGGTGGGGAGCCTCTCATCCGACCGGATGTGGTGGACATCGTGGCC
AGACTTCATGGGCTGGAAGGGCTGAGAACCATCGGCCTCACCACCAACGGCATCAACCTAGCCCGGCTGC
TGCCCCGACTTCAGCAAGCAGGGCTCAATGCTGTTAACATCAGCCTGGACACTCTGGTTCCCGCCAAGTT
TGAGTTCATCGTCCGCAGAAAAGGCTTCCACAAGGTTATGGAGGGTATCCACAAAGCCATCGAGCTGGGT
TACAAGCCTGTGAAGGTGAACTGTGTGGTGATGCGAGGCCTGAATGAAGACGAGCTGCTGGACTTCGTGG
CCCTGACAGAGGGCCTTCCCTTGGACGTGCGCTTCATTGAGTACATGCCATTTGACGGCAACAAGTGGAA
CTTCAAGAAGATGGTTAGCTACAAGGAGATGCTGGACACCATCCGACAGCGGTGGCCAGGGCTGGAGAAG
CTGCCGGAGGAGGACTCGAGCACTGCCAAGGCCTTTAAGATCCCTGGCTTCCAGGGTCAGATCAGCTTCA
TCACATCCATGTCAGAGCATTTCTGTGGGACCTGCAACCGGTTGCGCATCACAGCTGATGGGAACCTCAA
GGTCTGCCTCTTTGGGAACTCTGAGGTGTCACTGCGGGACCACCTGCGGGCGGGGGCCTCTGAGGAGGAG
CTGCTGAGAATCATTGGGGCCGCAGTGGGTAGGAAGAAGCGGCAGCACGCAGGCATGTTCAATATTGCCC
AGATGAAGAACCGGCCCATGATCCTCATCGGTGGGTGA

Translation (385 aa):
MAARPAFGIVRQLLRSNARGCSSGAPVTQPRPGEPSRPTREGLSLRLQFLQEHAAPFSAFLTDSFGRQHS
YLRISLTEKCNLRCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVA
RLHGLEGLRTIGLTTNGINLARLLPRLQQAGLNAVNISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELG
YKPVKVNCVVMRGLNEDELLDFVALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTIRQRWPGLEK
LPEEDSSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEEE
LLRIIGAAVGRKKRQHAGMFNIAQMKNRPMILIGG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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