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Report for CCDS57061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57061.1 Public Mus musculus 17 Ggnbp1 23 108 98 CCDS HistoryNCBI Gene:70772Re-query CCDS DB by CCDS ID:57061.1Re-query CCDS DB by GeneID:70772See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122106.8 ENSMUSP00000113880.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122106.8Link to Ensembl Protein Viewer:ENSMUSP00000113880.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122106Re-query CCDS DB by Protein ID:ENSMUSP00000113880
Original member Current member NCBI NM_001251881.1 NP_001238810.1 Accepted alive Link to Nucleotide Sequence:NM_001251881.1Link to Protein Sequence:NP_001238810.1Re-query CCDS DB by Nucleotide ID:NM_001251881Re-query CCDS DB by Protein ID:NP_001238810Link to BLAST:NP_001238810.1

Chromosomal Locations for CCDS 57061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27018130 27018170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27025337 27025459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27030676 27030800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27032563 27032657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27032761 27032971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27034765 27034904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27036113 27036166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGTGCTCACGAGCCCGGCGACCCTCTCGTCCTGCCTCCAGGACTGACCGACCTGGGATTGCAGACATGA
GCTACCACACCCGGCTCACACAGACCTGGGATGTGAACCCCAAGTCCAGGGACCAGCCTGATCTCCACGC
CCAACCACTTCAGAGAAGAGAAAGGGAGCATTTTGGCCAGGCCCTGGAGACAGAACAAGGATGCTTACAG
TGGGTTCCGGGACCACTGGCGCTCACCCCTGGGGCCTTCATCAAGGAGGAAGAGGATGAACACTGCCCAA
TTGAGTTTGGAGACCTCAAGCCGTCCTCTTGCAAGGTGGGGTCCACCCCGTGGAACTATCTCCTTGGCTT
GTACAAGCAGCTCCAGAAGTCAGCCATGGCCAAGGCTCAGAGACCAGCTGCGCCTCAGTTGGCTCTCAAG
GATGGCTTGCCCCACGAGGAGAAAGGGGAGAGAGAAGAAGCGGTGGATGAGAGCTGTCCCAAGTGGTGTG
CCCCTCGCGCCTCTAGCGACGAGAGCTGTCCCAAGTGGTGTGCCCCGCGTGCCTCCACCTACCAGTCGCC
GCTGCAAAAGAAGTTTAGGTCTACAGATACAGTGGGTTTTGTGGAGTCGGAGCTGAAGAAGATTCTGTCA
GTGCAACGAGAGGCTCGCCTCTGGAAGGTGGGCAACCCCGAGGGCCGGGAGCTGCTGACCCAGCCAGACA
TCACACTGGAGGAGGCTGGCATGGTGGACGGCCAGCACCTGCTCCTGGAGGAGATGGACGAGATGGGAAA
CTGGCCCCCTCCAGATTGA

Translation (262 aa):
MCSRARRPSRPASRTDRPGIADMSYHTRLTQTWDVNPKSRDQPDLHAQPLQRREREHFGQALETEQGCLQ
WVPGPLALTPGAFIKEEEDEHCPIEFGDLKPSSCKVGSTPWNYLLGLYKQLQKSAMAKAQRPAAPQLALK
DGLPHEEKGEREEAVDESCPKWCAPRASSDESCPKWCAPRASTYQSPLQKKFRSTDTVGFVESELKKILS
VQREARLWKVGNPEGRELLTQPDITLEEAGMVDGQHLLLEEMDEMGNWPPPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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