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Report for CCDS56825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56825.1 Public Mus musculus 11 Tmc8 23 108 98 CCDS HistoryNCBI Gene:217356Re-query CCDS DB by CCDS ID:56825.1Re-query CCDS DB by GeneID:217356See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56825.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117781.7 ENSMUSP00000113570.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117781.7Link to Ensembl Protein Viewer:ENSMUSP00000113570.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117781Re-query CCDS DB by Protein ID:ENSMUSP00000113570
Original member Current member NCBI NM_001195090.1 NP_001182019.1 Accepted alive Link to Nucleotide Sequence:NM_001195090.1Link to Protein Sequence:NP_001182019.1Re-query CCDS DB by Nucleotide ID:NM_001195090Re-query CCDS DB by Protein ID:NP_001182019Link to BLAST:NP_001182019.1

Chromosomal Locations for CCDS 56825.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117783110 117783270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117783395 117783543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117783771 117783920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117784113 117784195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117784805 117784941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117785120 117785273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117786393 117786557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117786729 117786868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117790216 117790339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117790683 117790780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117790908 117791091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117791228 117791358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117791443 117791601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117792089 117792167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117792538 117792792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGTTTCGCCAGTGGTCGGTGCAGTCAGGACCAGCCCCACGAAGGCCTGAATCCCAGGCGGCCTCGGAGG
AGCTGTGGGAGCAAGAAGTGGAGCGGCTATGCGCCTCCCGGACGCCTGTGCGGATGCTGCCTTACGCCAT
GGCAGACAAGCGCTTCATCCGGGAACTGCGGGAGCCCGAGGGAGTGAAGACCACCTTCTGGCAGCGGTGG
CATCGCCCGAGGCGGGTGGCGCGACAACACCTGAGGGAGGCAGAGCAACGGCTGGCCCGCGGCTTCGGTC
TCTGGGAGGGAGCTCTCTACGAGATTGGGGGCCTCTTCGGAACCGGGATCCAGTCCTACTTCACTTTCCT
TCGCTTCCTGCTGCTGCTCAACCTGCTGACCATGCTGCTGACTGCCTGCTTTGTGCTGCTGCCCCTGGTC
TGGCTCCGCCCCCCTGAGCTAGGCCCTGCCCTGAAACTGAGACTCCAGTGCTCCAGCAGCCCCCTGCCTC
AGAGTGACATTCCAAGGTTTCACAACCCACTTTGGAATATTTTAACGGGCAGAGCCTTCAACAACACCTA
TCTCTTCTACGGTGCCTACCGAGCGGGGCCAGAGAGCAGCTCTGAATACAGCATCCGCCTGGCCTACCTC
CTTAGCCCGATGGTCTGCCTGCTCCTCTGTTTCTGTGGGATACTGCAGAGGATGGCAGAAGGCCTACCCC
AGCAGACACTCTTGGGTCAGCGCTACAGGACACCCCTCAGCGCCAAAGTGTTCTCATCCTGGGACTTCTG
CATCCGGGTGTGGGAAGCCGCCACCATCAAGAAGCACGAAATCAGCAATGAACTGAAGGTGTGTCTGGAA
GAGGGCCGCCGCGTGGAGCTGGCTCAACAACAGACCAGGGCCCAGAAGGCCTGCCGCCTGCTCACCTACC
TTCGCACCAACATCCTCATTGTGCTCCTAGTGGTCGGAGCCATCAGCGCCATCTTCTGGGCCACCAAGTA
CTCACAGGACAACAAGGAGGAGTCCCTTTTTCTGGTGCTCCAGTACTTGCCTCCTGGAGTCATCTCCCTG
GTCAACTTCCTGGGCCCCCAATTGTTCACAGTCCTGATCCAGCTGGAGAACTACCCTCCCGGCACTGAAG
TCAACCTCACCCTGATCTGGTGCGTGGTGCTGAAGCTGGCCAGCTTGGGCATGTTCTCCTTCTCCCTGGG
TCAGACGGTGCTGTGCATAGGCAGAAACAAGACCAGCTGCGAGTCCTACGGCTACAACGCTTGCGACTAC
CAGTGCTGGGAGAACTCGGTGGGCGAAGAATTATATAAGTTAATCATCTTCAACTTCCTGCTCACCGTGG
CCTTCGCCTTCCTGGTCAGCCTGCCTCGAAGGCTGTTAGTGGAGCGCTTCTCGGGCTGGTTCTGGACTTG
GCTAGACCGGGAGGAGTTCCTGGTGCCTAAGAATGTGCTGGACATCGTGGCTGCACAGACTGTCACCTGG
ATGGGCCTCTTCTACTGCCCCCTGCTGCCACTACTCAACAGTGTCTTCCTCTTTCTCACCTTCTACATCA
AGAAGTACACCCTCCTGAGGAACTCCAGGGCGTCCCCGCGGCGTTTCCGAGCCTCCAGCTCCACCTTCTT
CTTCCACCTGGTGCTGCTCCTAGGCCTGCTTTTGGCTGCAGTACCTCTGGCCTACGTGATCAGCAGCACC
CACTCCTCCTGGGACTGTGGCCTCTTCACAAACTATTCGGCCCCCTGGCAGGTGGTACCCGAGCTGGTAG
CCCTCCAGCTCCCACTTCCTAGCCAGCGTGCCCTCCGTTACCTCAGCTCCCACGCCTTCAGCTTCCCACT
CCTCATTCTGCTCAGCATCGTCCTGACGGTTTGCATCTCCCAGTCCCGGGCGAATGCCAGAGCCATCCAG
GGGCTGAGGAAGCAACTGGTGTGGCAGGTCCAGGAAAAGTGGCACCTGGTGGACGACCTGTCGCGGCTGC
TGCCAGAACTGAGCCCAGAGCCCGGGTCCCCTCACTCTCGAGCTTCGCGTCCACGATCCTTCTGTCCTGG
ATTTCCATGCCCAGGCTCGCCCGGTCCCAGGACACCCAGGCTGGCACCCTCCAACAGGCTGAGCTCCTCG
AGCCTCGGAGCCCCCAGTGCCTCGGTTCCTGCCTCCAGATTTCACTTCCCCAGCCGCACAGAGCTGTAG

Translation (722 aa):
MFRQWSVQSGPAPRRPESQAASEELWEQEVERLCASRTPVRMLPYAMADKRFIRELREPEGVKTTFWQRW
HRPRRVARQHLREAEQRLARGFGLWEGALYEIGGLFGTGIQSYFTFLRFLLLLNLLTMLLTACFVLLPLV
WLRPPELGPALKLRLQCSSSPLPQSDIPRFHNPLWNILTGRAFNNTYLFYGAYRAGPESSSEYSIRLAYL
LSPMVCLLLCFCGILQRMAEGLPQQTLLGQRYRTPLSAKVFSSWDFCIRVWEAATIKKHEISNELKVCLE
EGRRVELAQQQTRAQKACRLLTYLRTNILIVLLVVGAISAIFWATKYSQDNKEESLFLVLQYLPPGVISL
VNFLGPQLFTVLIQLENYPPGTEVNLTLIWCVVLKLASLGMFSFSLGQTVLCIGRNKTSCESYGYNACDY
QCWENSVGEELYKLIIFNFLLTVAFAFLVSLPRRLLVERFSGWFWTWLDREEFLVPKNVLDIVAAQTVTW
MGLFYCPLLPLLNSVFLFLTFYIKKYTLLRNSRASPRRFRASSSTFFFHLVLLLGLLLAAVPLAYVISST
HSSWDCGLFTNYSAPWQVVPELVALQLPLPSQRALRYLSSHAFSFPLLILLSIVLTVCISQSRANARAIQ
GLRKQLVWQVQEKWHLVDDLSRLLPELSPEPGSPHSRASRPRSFCPGFPCPGSPGPRTPRLAPSNRLSSS
SLGAPSASVPASRFHFPSRTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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