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Report for CCDS5679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5679.1 Public Homo sapiens 7 TRIM4 24 110 108 CCDS HistoryNCBI Gene:89122Re-query CCDS DB by CCDS ID:5679.1Re-query CCDS DB by GeneID:89122See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355947.6 ENSP00000348216.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355947.6Link to Ensembl Protein Viewer:ENSP00000348216.2Re-query CCDS DB by Nucleotide ID:ENST00000355947Re-query CCDS DB by Protein ID:ENSP00000348216
Original member Current member NCBI NM_033017.4 NP_148977.2 Accepted alive Link to Nucleotide Sequence:NM_033017.4Link to Protein Sequence:NP_148977.2Re-query CCDS DB by Nucleotide ID:NM_033017Re-query CCDS DB by Protein ID:NP_148977Link to BLAST:NP_148977.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_148977.2 500 Q9C037-1 500 100% 0 0

Chromosomal Locations for CCDS 5679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99892163 99892746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99903218 99903315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99903576 99903598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99908582 99908812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99909565 99909660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99916702 99916779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99919009 99919401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGAAGCTGAGGACATCCAGGAGGAGTTGACCTGCCCCATCTGCCTGGACTATTTCCAGGACCCGGTGT
CCATCGAGTGCGGCCACAACTTCTGCCGCGGCTGCCTGCACCGCAACTGGGCGCCGGGCGGCGGCCCGTT
CCCCTGCCCCGAATGTCGGCACCCATCGGCGCCCGCCGCGCTGCGACCCAACTGGGCCCTGGCCAGGCTG
ACTGAGAAGACGCAGCGCCGGCGCCTGGGCCCCGTGCCCCCGGGCCTGTGCGGCCGCCACTGGGAGCCGC
TGCGGCTCTTCTGCGAGGACGACCAGCGGCCAGTGTGCCTGGTGTGCAGGGAGTCCCAGGAGCACCAGAC
TCACGCCATGGCACCCATCGACGAGGCCTTCGAGAGCTACCGGACAGGTAACTTTGACATCCACGTGGAT
GAATGGAAGAGAAGACTAATTAGGCTGCTCTTGTACCATTTTAAGCAGGAGGAGAAACTTCTTAAGTCTC
AGCGTAATCTCGTGGCCAAGATGAAGAAAGTCATGCATTTACAGGATGTAGAAGTGAAGAACGCCACACA
GTGGAAGGATAAGATAAAGAGTCAGCGAATGAGAATCAGCACGGAGTTTTCAAAGCTGCACAACTTCCTG
GTTGAAGAAGAGGACCTGTTTCTTCAGAGATTGAACAAAGAAGAAGAAGAGACGAAGAAGAAGCTGAATG
AGAACACGTTAAAACTCAATCAAACTATCGCTTCATTGAAGAAGCTCATCTTAGAGGTGGGGGAGAAGAG
CCAGGCTCCCACCCTGGAGCTGCTTCAGAATCCAAAAGAAGTGTTGACCAGGAGTGAGATCCAGGATGTG
AACTATTCTCTTGAAGCTGTAAAGGTGAAGACAGTGTGCCAGATACCATTGATGAAGGAAATGCTAAAGC
GATTCCAAGTGGCTGTAAACCTAGCTGAAGACACAGCTCATCCCAAACTCGTCTTCTCCCAGGAAGGGAG
ATACGTGAAAAATACAGCATCAGCCAGTTCTTGGCCAGTGTTTTCTTCAGCATGGAACTACTTTGCTGGA
TGGAGGAATCCTCAGAAGACTGCTTTTGTAGAGAGATTTCAGCACTTACCCTGTGTTCTGGGAAAAAACG
TTTTCACCTCAGGGAAACATTACTGGGAAGTTGAGAGTAGAGATAGTCTGGAGGTTGCTGTTGGGGTGTG
TCGGGAGGACGTCATGGGAATTACTGATCGTTCAAAAATGTCCCCAGATGTGGGCATCTGGGCGATTTAT
TGGAGTGCTGCTGGCTATTGGCCCTTGATAGGCTTCCCTGGAACTCCCACCCAGCAAGAGCCAGCTCTCC
ACCGAGTGGGGGTTTACCTGGATCGTGGGACTGGGAATGTCTCCTTCTACAGCGCTGTGGACGGAGTGCA
CCTGCACACCTTTTCTTGTTCTTCTGTCTCACGCCTCCGGCCATTTTTTTGGTTGAGTCCATTAGCATCT
TTAGTCATTCCACCAGTGACTGATAGGAAATGA

Translation (500 aa):
MEAEDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECRHPSAPAALRPNWALARL
TEKTQRRRLGPVPPGLCGRHWEPLRLFCEDDQRPVCLVCRESQEHQTHAMAPIDEAFESYRTGNFDIHVD
EWKRRLIRLLLYHFKQEEKLLKSQRNLVAKMKKVMHLQDVEVKNATQWKDKIKSQRMRISTEFSKLHNFL
VEEEDLFLQRLNKEEEETKKKLNENTLKLNQTIASLKKLILEVGEKSQAPTLELLQNPKEVLTRSEIQDV
NYSLEAVKVKTVCQIPLMKEMLKRFQVAVNLAEDTAHPKLVFSQEGRYVKNTASASSWPVFSSAWNYFAG
WRNPQKTAFVERFQHLPCVLGKNVFTSGKHYWEVESRDSLEVAVGVCREDVMGITDRSKMSPDVGIWAIY
WSAAGYWPLIGFPGTPTQQEPALHRVGVYLDRGTGNVSFYSAVDGVHLHTFSCSSVSRLRPFFWLSPLAS
LVIPPVTDRK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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