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Report for CCDS56670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56670.1 Public Mus musculus 10 Iyd 23 108 98 CCDS HistoryNCBI Gene:70337Re-query CCDS DB by CCDS ID:56670.1Re-query CCDS DB by GeneID:70337See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019896.4 ENSMUSP00000019896.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019896.4Link to Ensembl Protein Viewer:ENSMUSP00000019896.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019896Re-query CCDS DB by Protein ID:ENSMUSP00000019896
Original member Current member NCBI NM_027391.4 NP_081667.1 Accepted alive Link to Nucleotide Sequence:NM_027391.4Link to Protein Sequence:NP_081667.1Re-query CCDS DB by Nucleotide ID:NM_027391Re-query CCDS DB by Protein ID:NP_081667Link to BLAST:NP_081667.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081667.1 285 Q9DCX8 285 100% 0 0

Chromosomal Locations for CCDS 56670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 3540296 3540461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3545510 3545701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3547005 3547164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3551874 3552030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3554030 3554212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGTTTCTCCTCACCCCAGTCTTGGTAGCAGTTGTCTGTATCTTGGTTGTATGGGTCTTTAAAAATGCCG
ACAGGAACCTAGAGAAAAAGAAGGAGGAGGCTCAAGTTCAGCCCTGGGTGGATGAAGACTTGAAAGACAG
CACAGAAGACCTTCAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGTGGAGCACATC
CCGTTCTCTCACACCCGATACCCAGAACAGGAAATGAGGATGAGGTCCCAGGAATTCTATGAGCTCCTCA
ATAAGAGACGCTCCGTCAGGTTTATCAGCAGCGAGCACGTCCCAATGGAAGTCATTGAAAATGTCATCAA
AGCAGCAGGAACAGCTCCAAGTGGGGCCCATACAGAGCCCTGGACCTTTGTGGTGGTGAAGGACCCAGAC
ATGAAGCATAAGATCAGAGAGATTATCGAAGAGGAGGAAGAAATAAATTACATGAAAAGGATGGGAAAGC
GATGGGTCACAGACCTGAAGAAACTGAGAACCAACTGGATTAAGGAGTACTTGGACACCGCCCCAGTTCT
GATCCTCATTTTCAAACAAGTCCATGGTTTTGCTGCGAATGGAAAGAAGAAGGTCCACTACTACAACGAG
ATCAGTGTGTCCATCGCCTGTGGCCTCCTGCTGGCTGCACTGCAGAATGCAGGGCTAGTGACGGTCACTA
CCACTCCCCTCAACTGTGGTCCTCGTCTGAGGGTGCTCCTGGGCCGCCCCTCACATGAGAAGCTGTTGGT
GCTACTTCCTGTGGGGTACCCCAGCAGAGATGCCACAGTGCCTGACCTCAAGCGGAAAGCTCTGGACCAG
ATCATGGTGACAGTATAG

Translation (285 aa):
MFLLTPVLVAVVCILVVWVFKNADRNLEKKKEEAQVQPWVDEDLKDSTEDLQVEEDAEEWQEAEESVEHI
PFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPD
MKHKIREIIEEEEEINYMKRMGKRWVTDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNE
ISVSIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQ
IMVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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