NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56654.1 Public Mus musculus 1 Nr1i3 23 108 98 CCDS HistoryNCBI Gene:12355Re-query CCDS DB by CCDS ID:56654.1Re-query CCDS DB by GeneID:12355See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075469.11 ENSMUSP00000074915.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075469.11Link to Ensembl Protein Viewer:ENSMUSP00000074915.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075469Re-query CCDS DB by Protein ID:ENSMUSP00000074915
Original member Current member NCBI NM_001243062.1 NP_001229991.1 Accepted alive Link to Nucleotide Sequence:NM_001243062.1Link to Protein Sequence:NP_001229991.1Re-query CCDS DB by Nucleotide ID:NM_001243062Re-query CCDS DB by Protein ID:NP_001229991Link to BLAST:NP_001229991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229991.1 286 O35627-2 286 100% 0 0

Chromosomal Locations for CCDS 56654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171214349 171214485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171214944 171215074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171216379 171216548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171216746 171216885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171217076 171217221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171217314 171217430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171218589 171218608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGACAGCTATGCTAACACTAGAAACCATGGCCAGTGAAGAAGAATATGGGCCGAGGAACTGTGTGGTGT
GTGGAGACCGGGCCACAGGCTATCATTTCCACGCCCTGACTTGTGAGGGCTGCAAGGGCTTCTTCAGACG
AACAGTCAGCAAAACCATTGGTCCCATCTGTCCGTTTGCTGGAAGGTGTGAGGTCAGCAAGGCCCAGAGA
CGCCACTGTCCAGCCTGCAGGTTGCAGAAGTGTCTAAATGTTGGCATGAGGAAAGACATGATACTGTCAG
CAGAAGCCCTGGCATTGCGGCGAGCCAGACAGGCACAGCGGCGGGCAGAGAAAGCATCTTTGCAACTGAA
TCAGCAGCAGAAAGAACTGGTCCAGATCCTCCTGGGGGCCCACACTCGCCATGTGGGCCCCATGTTTGAC
CAGTTTGTGCAGTTCAAGCCTCCGGCCTATCTGTTCATGCATCACCGGCCTTTCCAGCCTCGGGGCCCCG
TGTTGCCTCTGCTCACACACTTTGCAGATATCAACACGTTTATGGTGCAACAGATCATCAAGTTCACCAA
GGATCTGCCGCTCTTCCGGTCCCTAACCATGGAGGACCAGATCTCCCTTCTCAAGGGAGCGGCTGTGGAA
ATATTGCATATCTCACTCAACACTACGTTCTGTCTTCAAACAGAGAATTTCTTCTGTGGGCCTCTTTGCT
ACAAGATGGAGGACGCAGTCCATGCAGGGTTCCAGTACGAGTTTTTGGAGTCGATCCTCCACTTCCATAA
AAACCTGAAAGGACTGCATCTCCAGGAGCCTGAGTATGTGCTCATGGCTGCCACGGCCCTCTTCTCCCCT
GGTTTCTGTATGCAAAGCTGA

Translation (286 aa):
MTAMLTLETMASEEEYGPRNCVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPICPFAGRCEVSKAQR
RHCPACRLQKCLNVGMRKDMILSAEALALRRARQAQRRAEKASLQLNQQQKELVQILLGAHTRHVGPMFD
QFVQFKPPAYLFMHHRPFQPRGPVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVE
ILHISLNTTFCLQTENFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSP
GFCMQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH