CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS56514.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
56514.1 |
Public |
Homo sapiens |
7 |
TCAF1 |
24 |
110 |
108 |
|
Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 56514.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENST00000355951.2 |
ENSP00000348220.2 |
|
Accepted |
alive |
|
|
|
NCBI |
NM_001206938.2 |
NP_001193867.2 |
|
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001193867.2 |
919 |
Q9Y4C2-2 |
919 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 56514.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2760 nt): ATGGCGACTCCCTCTGCTGCCTTCGAGGCCCTTATGAATGGTGTGACAAGCTGGGATGTACCCGAAGATG CTGTTCCATGTGAACTGCTTCTTATTGGAGAGGCTTCATTTCCTGTGATGGTGAATGACATGGGCCAGGT CCTCATTGCTGCCTCCTCCTATGGCCGTGGCCGCCTGGTGGTCGTGTCCCATGAGGACTACTTGGTGGAA GCCCAGCTCACGCCCTTTCTCCTGAACGCAGTGGGGTGGCTTTGCTCTTCCCCTGGGGCTCCCATTGGTG TACACCCATCCCTGGCACCTTTGGCCAAAATCCTCGAGGGCTCTGGAGTGGATGCAAAGGTTGAGCCAGA AGTGAAAGACTCCCTGGGGGTTTACTGTATTGATGCCTACAATGAAACCATGACAGAAAAGCTGGTCAAG TTCATGAAATGTGGTGGCGGCTTGCTCATAGGAGGACAAGCCTGGGATTGGGCCAACCAGGGGGAGGATG AAAGGGTTCTGTTCACGTTCCCTGGGAACCTCGTGACCAGTGTGGCTGGCATTTACTTTACTGACAACAA AGGGGACACGAGTTTCTTTAAAGTCTCCAAGAAGATGCCCAAGATCCCAGTGTTGGTTAGTTGTGAAGAT GACCTCTCCGACGACAGAGAAGAGCTTCTGCATGGGATTTCAGAGCTGGACATCAGCAACTCGGATTGTT TCCCATCCCAGCTGCTAGTGCATGGGGCTTTAGCCTTTCCTCTAGGGTTAGATTCCTACCATGGCTGTGT TATAGCGGCTGCCCGCTATGGCCGGGGCCGGGTGGTTGTGACTGGCCATAAGGTATTATTCACTGTTGGT AAACTGGGCCCCTTTCTGCTCAATGCTGTCCGCTGGCTGGATGGGGGCCGCAGAGGCAAGGTTGTGGTGC AGACAGAGCTGAGAACCCTGAGTGGCCTCCTCGCAGTGGGGGGCATAGACACCAGCATCGAGCCCAATCT GACCAGTGATGCAAGTGTCTACTGCTTTGAACCCGTGAGTGAAGTGGGGGTCAAGGAACTGCAGGAGTTT GTAGCAGAGGGTGGCGGGCTATTTGTTGGAGCCCAAGCCTGGTGGTGGGCCTTCAAGAACCCCGGAGTGT CCCCTTTGGCTCGATTCCCAGGAAACCTCCTCCTCAACCCCTTTGGCATCAGCATTACAAGCCAAAGCCT CAATCCAGGGCCCTTTCGTACTCCTAAAGCAGGGATAAGGACCTATCACTTCCGCTCCACCTTGGCCGAG TTCCAGGTTATAATGGGCAGGAAGAGAGGAAATGTGGAAAAGGGCTGGTTGGCAAAGCTGGGACCAGATG GTGCAGCTTTCCTGCAGATTCCCGCAGAAGAGATCCCTGCCTACATGTCTGTGCATCGACTCCTGAGGAA GCTGCTAAGTCGATATCGGCTTCCAGTAGCAACCCGAGAGAACCCTGTTATCAATGACTGCTGCAGAGGT GCTATGCTTTCCCTGGCCACAGGGCTGGCCCACTCTGGAAGCGACCTCTCTCTGTTAGTCCCAGAAATTG AAGATATGTACAGCAGCCCCTATCTGCGCCCCTCAGAATCTCCTATCACCGTCGAGGTCAACTGCACCAA TCCAGGCACCAGATATTGCTGGATGAGTACTGGGCTCTACATACCTGGAAGGCAAATTATAGAAGTCTCA CTGCCTGAAGCTGCTGCCTCTGCCGACCTGAAGATACAGATTGGCTGCCACACAGATGACCTGACCAGGG CCAGCAAGCTTTTCCGAGGCCCACTCGTAATTAACCGGTGCTGCTTGGACAAACCCACAAAATCGATCAC GTGCCTCTGGGGTGGACTCCTCTATATAATTGTGCCTCAGAACAGCAAACTGGGTTCTGTGCCTGTCACC GTGAAGGGGGCTGTGCATGCTCCATACTACAAGCTGGGGGAGACCACCCTGGAGGAGTGGAAGAGGCGTA TCCAGGAGAATCCAGGGCCCTGGGGAGAGCTGGCCACGGACAACATCATTCTGACCGTGCCGACCGCAAA TCTTCGTACTCTGGAGAACCCTGAGCCGCTGCTCCGCCTCTGGGATGAGGTGATGCAGGCTGTGGCGCGA CTGGGAGCTGAGCCCTTCCCTTTGCGCCTGCCTCAGAGGATTGTTGCCGACGTGCAGATCTCAGTGGGCT GGATGCATGCAGGGTACCCCATCATGTGCCATCTGGAGTCAGTGCAGGAGCTCATCAACGAGAAGCTCAT CAGAACCAAGGGGCTGTGGGGCCCCGTCCATGAGCTGGGCCGCAACCAGCAGCGGCAGGAGTGGGAGTTC CCACCACACACCACCGAGGCCACCTGCAACCTGTGGTGTGTGTATGTGCATGAGACGGTCTTGGGCATTC CTCGAAGCCGTGCCAATATTGCTCTGTGGCCCCCAGTTCGGGAGAAGAGAGTCAGAATCTACCTGAGCAA GGGTCCCAATGTGAAAAACTGGAATGCATGGACCGCACTGGAAACGTATTTACAGCTCCAGGAAGCCTTT GGTTGGGAGCCATTCATCCGTCTCTTCACCGAGTACAGGAACCAGACCAACTTGCCCACAGAAAATGTTG ACAAAATGAATCTGTGGGTCAAGATGTTCTCCCACCAAGTGCAGAAGAACCTGGCTCCGTTCTTTGAGGC CTGGGCCTGGCCCATCCAGAAGGAAGTGGCTACCAGCCTGGCCTATCTGCCTGAATGGAAGGAAAATATT ATGAAATTGTACCTCCTCACACAGATGTAA
Translation (919 aa): MATPSAAFEALMNGVTSWDVPEDAVPCELLLIGEASFPVMVNDMGQVLIAASSYGRGRLVVVSHEDYLVE AQLTPFLLNAVGWLCSSPGAPIGVHPSLAPLAKILEGSGVDAKVEPEVKDSLGVYCIDAYNETMTEKLVK FMKCGGGLLIGGQAWDWANQGEDERVLFTFPGNLVTSVAGIYFTDNKGDTSFFKVSKKMPKIPVLVSCED DLSDDREELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVG KLGPFLLNAVRWLDGGRRGKVVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSEVGVKELQEF VAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAE FQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRG AMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCTNPGTRYCWMSTGLYIPGRQIIEVS LPEAAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQNSKLGSVPVT VKGAVHAPYYKLGETTLEEWKRRIQENPGPWGELATDNIILTVPTANLRTLENPEPLLRLWDEVMQAVAR LGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEF PPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPNVKNWNAWTALETYLQLQEAF GWEPFIRLFTEYRNQTNLPTENVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENI MKLYLLTQM
|