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Report for CCDS56504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56504.1 Public Homo sapiens 7 IFRD1 24 110 108 CCDS HistoryNCBI Gene:3475Re-query CCDS DB by CCDS ID:56504.1Re-query CCDS DB by GeneID:3475See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535603.5 ENSP00000439188.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535603.5Link to Ensembl Protein Viewer:ENSP00000439188.1Re-query CCDS DB by Nucleotide ID:ENST00000535603Re-query CCDS DB by Protein ID:ENSP00000439188
Original member Current member EBI ENST00000621379.4 ENSP00000483255.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621379.4Link to Ensembl Protein Viewer:ENSP00000483255.1Re-query CCDS DB by Nucleotide ID:ENST00000621379Re-query CCDS DB by Protein ID:ENSP00000483255
Original member Current member NCBI NM_001197079.2 NP_001184008.1 Accepted alive Link to Nucleotide Sequence:NM_001197079.2Link to Protein Sequence:NP_001184008.1Re-query CCDS DB by Nucleotide ID:NM_001197079Re-query CCDS DB by Protein ID:NP_001184008Link to BLAST:NP_001184008.1
Original member Current member NCBI NM_001197080.2 NP_001184009.1 Accepted alive Link to Nucleotide Sequence:NM_001197080.2Link to Protein Sequence:NP_001184009.1Re-query CCDS DB by Nucleotide ID:NM_001197080Re-query CCDS DB by Protein ID:NP_001184009Link to BLAST:NP_001184009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184008.1 401 O00458-2 401 100% 0 0
NP_001184009.1 401 O00458-2 401 100% 0 0

Chromosomal Locations for CCDS 56504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112455819 112455867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112456002 112456086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112456914 112457038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112458861 112459018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112461866 112461916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112462001 112462179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112462270 112462378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112467981 112468115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112472219 112472347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112472766 112472861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112475430 112475519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGAGCCATTGCAGTGGTTATAGCGATCCTTCCAGTTTTGCTGAAGATGGACCAGAAGTCCTTGATGAGG
AAGGAACTCAAGAAGACCTAGAGTACAAGTTGAAGGGATTAATTGACCTAACCCTGGATAAGAGTGCGAA
GACAAGGCAAGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTTCAAAAATGCTGTATGAATTTATTCTG
GAAAGGAGAATGACTTTAACTGATAGCATTGAACGCTGCCTGAAAAAAGGTAAGAGTGATGAGCAACGTG
CAGCTGCAGCGTTAGCATCTGTTCTTTGTATTCAGCTGGGCCCTGGAATTGAAAGTGAAGAGATTTTGAA
AACTCTTGGACCAATCCTAAAGAAAATCATTTGTGATGGGTCAGCTAGTATGCAGGCTAGGCAAACTTGT
GCAACTTGCTTTGGTGTTTGCTGTTTTATTGCCACAGATGACATTACTGAACTATACTCAACTCTGGAAT
GTTTGGAAAATATCTTCACTAAATCCTATCTCAAAGAGAAAGACACTACTGTTATTTGCAGCACTCCTAA
TACAGTGCTTCATATCAGCTCTCTTCTTGCATGGACACTACTGCTGACCATATGCCCAATCAATGAAGTG
AAGAAAAAGCTTGAGATGCATTTCCATAAGCTTCCAAGCCTCCTCTCTTGTGATGATGTAAACATGAGAA
TAGCTGCTGGTGAATCTTTGGCACTTCTCTTTGAATTGGCCAGAGGAATAGAGAGTGACTTTTTTTATGA
AGACATGGAGTCCTTGACGCAGATGCTTAGGGCCTTGGCAACAGATGGAAATAAACACCGGGCCAAAGTG
GACAAGAGAAAGCAGCGGTCAGTTTTCAGAGATGTCCTGAGGGCAGTGGAGGAACGGGATTTTCCAACAG
AAACCATTAAATTTGGTCCTGAACGCATGTATATTGATTGCTGGGTAAAAAAACACACCTATGACACCTT
TAAGGAGGTTCTTGGATCAGGGATGCAGTACCACTTGCAGTCAAATGAATTCCTTCGAAATGTATTTGAA
CTTGGACCCCCAGTGATGCTTGATGCTGCAACGCTTAAAACGATGAAGATTTCTCGTTTCGAAAGGCATT
TATATAACTCTGCAGCCTTCAAAGCTCGAACCAAAGCTAGAAGCAAATGTCGAGATAAGAGAGCAGATGT
TGGAGAATTCTTCTAG

Translation (401 aa):
MSHCSGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL
ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTC
ATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVLHISSLLAWTLLLTICPINEV
KKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALATDGNKHRAKV
DKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFE
LGPPVMLDAATLKTMKISRFERHLYNSAAFKARTKARSKCRDKRADVGEFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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