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Report for CCDS56460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56460.1 Public Homo sapiens 6 PDCD2 24 110 108 CCDS HistoryNCBI Gene:5134Re-query CCDS DB by CCDS ID:56460.1Re-query CCDS DB by GeneID:5134See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56460.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443345.2 ENSP00000397272.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443345.2Link to Ensembl Protein Viewer:ENSP00000397272.2Re-query CCDS DB by Nucleotide ID:ENST00000443345Re-query CCDS DB by Protein ID:ENSP00000397272
Original member Current member NCBI NM_001199463.2 NP_001186392.1 Accepted alive Link to Nucleotide Sequence:NM_001199463.2Link to Protein Sequence:NP_001186392.1Re-query CCDS DB by Nucleotide ID:NM_001199463Re-query CCDS DB by Protein ID:NP_001186392Link to BLAST:NP_001186392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186392.1 195 Q16342-2 195 100% 0 0

Chromosomal Locations for CCDS 56460.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 170583028 170583188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170583505 170583747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170584299 170584392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170584492 170584581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCTGCCGCCGGGGCCAGGCCTGTGGAGCTGGGCTTCGCCGAGTCGGCGCCGGCGTGGCGACTGCGCA
GCGAGCAGTTCCCCAGCAAGGTGTATGCGCCGCTGCCTGGCCGCCCGGACGCCTTCCACCGCTGCATCTT
CCTCTTCTGCTGCCGCGAGCAGCCGTGCTGTGCCGGCCTGCGAGTTTTTAGGAATCAACTACCCAGGAAA
AACGATTTTTACTCATATGAGCCACCTTCTGAGAATCCTCCCCCAGAAACAGGAGAATCAGTGTGTCTCC
AGCTTAAGTCTGGTGCTCATCTCTGCAGGGTTTGTGGCTGTTTAGGCCCCAAAACGTGCTCCAGATGCCA
CAAAGCATATTACTGCAGCAAGGAGCATCAGACCCTAGACTGGAGATTGGGACATAAGCAGGCTTGTGCA
CAACCAGATCATCTGGACCATATAATTCCAGACCACAACTTCCTTTTTCCAGAATTTGAAATTGTAATAG
AAACAGAAGATGAGATTATGCCTGAGGTTGTGGAAAAGGAAGATTACTCAGAGATTATAGGGAGCATGGG
TAAGCAGTTTCAGGACTTCATTCATTAA

Translation (195 aa):
MAAAGARPVELGFAESAPAWRLRSEQFPSKVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRK
NDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACA
QPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGKQFQDFIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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