NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56440.1 Public Homo sapiens 6 ORC3 24 110 108 CCDS HistoryNCBI Gene:23595Re-query CCDS DB by CCDS ID:56440.1Re-query CCDS DB by GeneID:23595See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000546266.5 ENSP00000444695.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546266.5Link to Ensembl Protein Viewer:ENSP00000444695.1Re-query CCDS DB by Nucleotide ID:ENST00000546266Re-query CCDS DB by Protein ID:ENSP00000444695
Original member Current member NCBI NM_001197259.2 NP_001184188.1 Accepted alive Link to Nucleotide Sequence:NM_001197259.2Link to Protein Sequence:NP_001184188.1Re-query CCDS DB by Nucleotide ID:NM_001197259Re-query CCDS DB by Protein ID:NP_001184188Link to BLAST:NP_001184188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184188.1 568 Q9UBD5-3 568 100% 0 0

Chromosomal Locations for CCDS 56440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87607675 87607824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87609096 87609229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87612089 87612248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87616314 87616427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87621354 87621487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87621950 87622013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87634845 87634961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87636407 87636486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87653116 87653249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87656906 87656982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87657921 87658018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87663003 87663144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87664743 87664859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87665754 87665833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87667018 87667123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGAAACATTTTTTGCAAAAGTTGATCTCACAGTTGATGGACTGCTGTGTAGATATAAAATCCAAAGAGG
AGGAAAGTGTTCACGTCACCCAAAGAAAGACACATTATTCAATGGATTCACTTTCCAGTTGGTATATGAC
TGTCACACAGAAGACGGACCCAAAAATGCTAAGCAAAAAAAGGACTACTTCTAGCCAATGGCAGTCTCCT
CCTGTTGTCGTTATCTTGAAGGATATGGAAAGCTTTGCCACAAAAGTACTACAAGACTTCATAATTATCA
GCAGTCAACATCTCCATGAATTTCCACTAATACTCATTTTTGGAATAGCCACATCTCCTATTATCATCCA
CCGATTGCTTCCTCATGCAGTATCATCTCTATTGTGCATAGAACTGTTCCAATCTTTGTCTTGTAAGGAG
CACCTGACTACGGTACTCGATAAGCTACTTCTTACAACTCAGTTTCCCTTTAAAATAAATGAAAAAGTAT
TACAGGTTCTGACCAACATCTTTTTGTATCATGATTTCTCAGTTCAAAACTTTATAAAAGGACTTCAGCT
TTCTCTATTAGAGCATTTCTATTCCCAGCCCTTAAGTGTCCTGTGCTGTAATCTTCCAGAAGCCAAAAGA
AGAATAAATTTTTTATCAAATAATCAATGTGAAAACATCCGACGTCTACCATCTTTTAGGAGGTACGTGG
AAAAGCAAGCTTCAGAAAAGCAAGTTGCGCTCTTGACCAATGAGAGATATTTGAAGGAGGAAACACAATT
ATTACTAGAAAACCTGCATGTTTATCATATGAATTACTTCCTGGTTTTGAGATGTCTTCATAAGTTCACC
TCTTCTCTTCCCAAGTATCCACTAGGTCGACAGATCAGAGAGTTGTACTGTACATGTTTAGAAAAGAACA
TATGGGATTCAGAGGAGTATGCATCAGTCTTGCAGCTGCTGAGGATGTTGGCAAAGGATGAACTGATGAC
CATACTTGAGAAATGTTTCAAGGTTTTTAAGTCTTATTGTGAAAACCACCTTGGCAGCACAGCTAAGAGA
ATAGAGGAGTTCCTGGCCCAGTTTCAGAGCCTCGATGAAACCAAAGAGGAAGAAGATGCTTCTGGGTCAC
AGCCAAAGGGGCTTCAGAAGACAGACCTCTATCATCTTCAGAAGTCCTTATTGGAAATGAAGGAGTTAAG
AAGAAGTAAGAAGCAAACCAAATTTGAAGTACTCAGAGAAAATGTTGTGAACTTCATTGACTGTCTAGTG
AGAGAATACCTTCTGCCTCCTGAGACACAGCCTCTCCATGAGGTGGTGTACTTCAGTGCTGCCCATGCCC
TTCGTGAGCATTTAAATGCTGCTCCGCGAATTGCCCTCCATACTGCACTCAACAATCCTTACTATTATCT
CAAGAATGAAGCACTGAAAAGCGAAGAAGGCTGCATTCCGAATATCGCCCCAGACATCTGCATAGCATAC
AAACTGCACCTAGAGTGTAGCAGGCTCATCAACCTCGTGGACTGGTCAGAGGCTTTTGCAACAGTTGTGA
CAGCTGCTGAAAAAATGGATGCAAATTCTGCAACCTCAGAAGAAATGAATGAAATTATCCATGCTCGGTT
TATTAGAGCTGTTTCTGAACTAGAACTTTTAGGATTTATAAAACCTACCAAACAGAAGACTGACCATGTG
GCAAGACTAACATGGGGAGGCTGCTAG

Translation (568 aa):
MKHFLQKLISQLMDCCVDIKSKEEESVHVTQRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSP
PVVVILKDMESFATKVLQDFIIISSQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKE
HLTTVLDKLLLTTQFPFKINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKR
RINFLSNNQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYFLVLRCLHKFT
SSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILEKCFKVFKSYCENHLGSTAKR
IEEFLAQFQSLDETKEEEDASGSQPKGLQKTDLYHLQKSLLEMKELRRSKKQTKFEVLRENVVNFIDCLV
REYLLPPETQPLHEVVYFSAAHALREHLNAAPRIALHTALNNPYYYLKNEALKSEEGCIPNIAPDICIAY
KLHLECSRLINLVDWSEAFATVVTAAEKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKTDHV
ARLTWGGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH