NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56408.1 Public Homo sapiens 6 ZKSCAN3 24 110 108 CCDS HistoryNCBI Gene:80317Re-query CCDS DB by CCDS ID:56408.1Re-query CCDS DB by GeneID:80317See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341464.9 ENSP00000341883.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341464.9Link to Ensembl Protein Viewer:ENSP00000341883.5Re-query CCDS DB by Nucleotide ID:ENST00000341464Re-query CCDS DB by Protein ID:ENSP00000341883
Original member Current member NCBI NM_001242895.2 NP_001229824.1 Accepted alive Link to Nucleotide Sequence:NM_001242895.2Link to Protein Sequence:NP_001229824.1Re-query CCDS DB by Nucleotide ID:NM_001242895Re-query CCDS DB by Protein ID:NP_001229824Link to BLAST:NP_001229824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229824.1 390 Q9BRR0-2 390 100% 0 0

Chromosomal Locations for CCDS 56408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28361366 28361471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28363303 28363385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28363692 28363815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28365426 28366285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGCACTATTGACACCAGCCCCAGGGTCACAAAGTAGCCAATTTCAGCTAATGAAGGCTCTGCTCAAGC
ATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAGTTCTCCAGGTCCCCGTGCTTGCCCATGGAGGATG
CTGCAGAGAAGATAAAGTGGTAGCTTCTAGGCTTACTCCAGAGTCCCAGGGGTTGTTGAAAGTGGAAGAT
GTGGCCCTGACCCTCACCCCTGAATGGACACAGCAGGATTCATCTCAGGGGAATCTCTGTAGAGATGAAA
AGCAGGAGAACCATGGCAGCCTGGTCTCCCTGGGTGATGAAAAACAGACTAAGAGCAGGGACTTGCCTCC
AGCTGAGGAGCTTCCAGAAAAGGAGCATGGGAAGATATCGTGCCACCTGAGAGAAGACATTGCCCAGATT
CCTACATGTGCAGAAGCTGGTGAACAGGAGGGCAGGCTACAAAGAAAGCAGAAAAATGCCACAGGAGGGA
GGCGGCACATCTGCCATGAATGTGGAAAGAGTTTTGCTCAAAGCTCAGGCCTGAGTAAACACAGGAGAAT
CCACACTGGTGAGAAACCCTACGAATGTGAAGAGTGTGGCAAAGCCTTCATTGGGAGCTCTGCCCTTGTC
ATTCATCAGAGAGTCCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCATA
GCTCAGACCTTATCAAGCATCAGAGAACCCACACTGGGGAGAAGCCCTATGAGTGTGATGACTGTGGGAA
GACCTTCAGCCAGAGCTGCAGCCTCCTTGAACATCACAGAATCCACACTGGGGAGAAGCCGTATCAGTGC
AGTATGTGTGGCAAAGCCTTTAGGCGAAGTTCACATCTCCTGAGACATCAGAGGATCCATACTGGGGATA
AAAATGTTCAGGAACCTGAGCAGGGAGAGGCCTGGAAAAGTAGGATGGAAAGCCAGTTGGAAAATGTTGA
AACTCCCATGTCTTATAAATGTAATGAGTGTGAAAGAAGTTTCACTCAGAATACAGGCCTCATTGAACAT
CAAAAAATCCACACTGGTGAGAAACCCTATCAGTGTAATGCGTGTGGAAAAGGCTTCACCCGAATTTCAT
ACCTTGTTCAACATCAGAGAAGCCATGTAGGGAAAAACATCCTATCACAGTGA

Translation (390 aa):
MALLTPAPGSQSSQFQLMKALLKHESVGSQPLQDRVLQVPVLAHGGCCREDKVVASRLTPESQGLLKVED
VALTLTPEWTQQDSSQGNLCRDEKQENHGSLVSLGDEKQTKSRDLPPAEELPEKEHGKISCHLREDIAQI
PTCAEAGEQEGRLQRKQKNATGGRRHICHECGKSFAQSSGLSKHRRIHTGEKPYECEECGKAFIGSSALV
IHQRVHTGEKPYECEECGKAFSHSSDLIKHQRTHTGEKPYECDDCGKTFSQSCSLLEHHRIHTGEKPYQC
SMCGKAFRRSSHLLRHQRIHTGDKNVQEPEQGEAWKSRMESQLENVETPMSYKCNECERSFTQNTGLIEH
QKIHTGEKPYQCNACGKGFTRISYLVQHQRSHVGKNILSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH