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Report for CCDS56397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56397.1 Public Homo sapiens 6 GFOD1 24 110 108 CCDS HistoryNCBI Gene:54438Re-query CCDS DB by CCDS ID:56397.1Re-query CCDS DB by GeneID:54438See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379284.1 ENSP00000368586.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379284.1Link to Ensembl Protein Viewer:ENSP00000368586.1Re-query CCDS DB by Nucleotide ID:ENST00000379284Re-query CCDS DB by Protein ID:ENSP00000368586
Original member Current member EBI ENST00000612338.4 ENSP00000479493.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612338.4Link to Ensembl Protein Viewer:ENSP00000479493.1Re-query CCDS DB by Nucleotide ID:ENST00000612338Re-query CCDS DB by Protein ID:ENSP00000479493
Original member Current member NCBI NM_001242628.2 NP_001229557.1 Accepted alive Link to Nucleotide Sequence:NM_001242628.2Link to Protein Sequence:NP_001229557.1Re-query CCDS DB by Nucleotide ID:NM_001242628Re-query CCDS DB by Protein ID:NP_001229557Link to BLAST:NP_001229557.1
Original member Current member NCBI NM_001242630.2 NP_001229559.1 Accepted alive Link to Nucleotide Sequence:NM_001242630.2Link to Protein Sequence:NP_001229559.1Re-query CCDS DB by Nucleotide ID:NM_001242630Re-query CCDS DB by Protein ID:NP_001229559Link to BLAST:NP_001229559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229557.1 287 Q9NXC2-2 287 100% 0 0
NP_001229559.1 287 Q9NXC2-2 287 100% 0 0

Chromosomal Locations for CCDS 56397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13364743 13365606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGACCTCGGCCGCCCACTACTACCCCAAGCTCATGAGCATCATGGGCAACGTGCTGCGCTTCCTGCCGG
CTTTCGTGCGCATGAAGCAGCTGATCGAGGAGGGCTACGTGGGCGAGCCGCTGGTGTGTGAGGTGCAGGT
GCACGGCGGCAGCCTGCTGGGCAAGAAGTACAACTGGAGCTGCGACGACTTGATGGGCGGCGGCGGCCTG
CACTCCGTGGGCACCTACATCATCGACCTGCTCACCTTCCTCACCGGCCAAAAGGCCGTCAAGGTCCACG
GGCTGCTCAAGACCTTCGTGAAGCAGACTGACCACATCAAGGGCATCCGACAGATCACCAGCGATGACTT
CTGCACCTTCCAGATGGTGCTGGAGGGCGGGGTGTGCTGCACCGTCACCCTCAACTTCAACGTGCCCGGC
GAGTTCAAGCAGGATGTCACTGTGGTGGGCTCAGCCGGGCGCCTGCTGGCCGTGGGCACCGACCTGTACG
GGCAGCGCAACAGCGCCCCGGAGCAGGAGCTGCTGGTGCAGGACGCCACGCCGGTGAGCAACTCCCTGCT
TCCGGAGAAGGCCTTCAGCGACATCCCCTCGCCCTACCTGCGCGGCACCATCAAGATGATGCAGGCGGTG
CGCCAGGCCTTCCAGGACCAGGACGACCGGCGCACGTGGGATGGGCGGCCCCTCACCATGGCCGCCACCT
TCGACGACTGCCTGTATGCCTTGTGCGTGGTGGACACCATCAAGAGGTCCAGCCAGACGGGCGAGTGGCA
GAACATTGCCATCATGACCGAGGAGCCGGAGCTGAGCCCCGCCTACCTGATCAGCGAGGCCATGCGCCGC
AGCAGGATGTCCCTCTACTGTTAG

Translation (287 aa):
MTSAAHYYPKLMSIMGNVLRFLPAFVRMKQLIEEGYVGEPLVCEVQVHGGSLLGKKYNWSCDDLMGGGGL
HSVGTYIIDLLTFLTGQKAVKVHGLLKTFVKQTDHIKGIRQITSDDFCTFQMVLEGGVCCTVTLNFNVPG
EFKQDVTVVGSAGRLLAVGTDLYGQRNSAPEQELLVQDATPVSNSLLPEKAFSDIPSPYLRGTIKMMQAV
RQAFQDQDDRRTWDGRPLTMAATFDDCLYALCVVDTIKRSSQTGEWQNIAIMTEEPELSPAYLISEAMRR
SRMSLYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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