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Report for CCDS56391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56391.1 Public Homo sapiens 5 RNF145 24 110 108 CCDS HistoryNCBI Gene:153830Re-query CCDS DB by CCDS ID:56391.1Re-query CCDS DB by GeneID:153830See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520638.1 ENSP00000429071.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520638.1Link to Ensembl Protein Viewer:ENSP00000429071.1Re-query CCDS DB by Nucleotide ID:ENST00000520638Re-query CCDS DB by Protein ID:ENSP00000429071
Original member Current member NCBI NM_001199382.2 NP_001186311.1 Accepted alive Link to Nucleotide Sequence:NM_001199382.2Link to Protein Sequence:NP_001186311.1Re-query CCDS DB by Nucleotide ID:NM_001199382Re-query CCDS DB by Protein ID:NP_001186311Link to BLAST:NP_001186311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186311.1 677 Q96MT1-4 677 100% 0 0

Chromosomal Locations for CCDS 56391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 159158670 159159035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159161266 159161622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159162932 159163079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159168873 159169055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159169679 159169819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159173983 159174158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159176632 159176867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159181960 159182051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159194716 159194824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159203434 159203656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159207475 159207477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGTCTTCTCCAAGAAAAAAAAAAAGAAAAAAAAAAACAACATGGCTGCAAAGGAGAAACTGGAGGCAG
TGTTAAATGTGGCCCTGAGGGTGCCAAGCATCATGCTGTTGGATGTCCTGTACAGATGGGATGTCAGCTC
CTTTTTCCAGCAGATCCAAAGAAGTAGCCTTAGTAATAACCCTCTTTTCCAGTATAAGTATTTGGCTCTT
AATATGCATTATGTAGGTTATATCTTAAGTGTGGTGCTGCTAACATTGCCCAGGCAGCATCTGGTTCAGC
TTTATCTATATTTTTTGACTGCTCTGCTCCTCTATGCTGGACATCAAATTTCCAGGGACTATGTTCGGAG
TGAACTGGAGTTTGCCTATGAGGGACCAATGTATTTAGAACCTCTCTCTATGAATCGGTTTACCACAGCC
TTAATAGGTCAGTTGGTGGTGTGTACTTTATGCTCCTGTGTCATGAAAACAAAGCAGATTTGGCTGTTTT
CAGCTCACATGCTTCCTCTGCTAGCACGACTCTGCCTTGTTCCTTTGGAGACAATTGTTATCATCAATAA
ATTTGCTATGATTTTTACTGGATTGGAAGTTCTCTATTTTCTTGGGTCTAATCTTTTGGTACCTTATAAC
CTTGCTAAATCTGCATACAGAGAATTGGTTCAGGTAGTGGAGGTATATGGCCTTCTCGCCTTGGGAATGT
CCCTGTGGAATCAACTGGTAGTCCCTGTTCTTTTCATGGTTTTCTGGCTCGTCTTATTTGCTCTTCAGAT
TTACTCCTATTTCAGTACTCGAGATCAGCCTGCATCACGTGAGAGGCTTCTTTTCCTTTTTCTGACAAGT
ATTGCGGAATGCTGCAGCACTCCTTACTCTCTTTTGGGTTTGGTCTTCACGGTTTCTTTTGTTGCCTTGG
GTGTTCTCACACTCTGCAAGTTTTACTTGCAGGGTTATCGAGCTTTCATGAATGATCCTGCCATGAATCG
GGGCATGACAGAAGGAGTAACGCTGTTAATCCTGGCAGTGCAGACTGGGCTGATAGAACTGCAGGTTGTT
CATCGGGCATTCTTGCTCAGTATTATCCTTTTCATTGTCGTAGCTTCTATCCTACAGTCTATGTTAGAAA
TTGCAGATCCTATTGTTTTGGCACTGGGAGCATCTAGAGACAAGAGCTTGTGGAAACACTTCCGTGCTGT
AAGCCTTTGTTTATTTTTATTGGTATTCCCTGCTTATATGGCTTATATGATTTGCCAGTTTTTCCACATG
GATTTTTGGCTTCTTATCATTATTTCCAGCAGCATTCTTACCTCTCTTCAGGTTCTGGGAACACTTTTTA
TTTATGTCTTATTTATGGTTGAGGAATTCAGAAAAGAGCCAGTGGAAAACATGGATGATGTCATCTACTA
TGTGAATGGCACTTACCGCCTGCTGGAGTTTCTTGTGGCCCTCTGTGTGGTGGCCTATGGCGTCTCAGAG
ACCATCTTTGGAGAATGGACAGTGATGGGCTCAATGATCATCTTCATTCATTCCTACTATAACGTGTGGC
TTCGGGCCCAGCTGGGGTGGAAGAGCTTTCTTCTCCGCAGGGATGCTGTGAATAAGATTAAATCGTTACC
CATTGCTACGAAAGAGCAGCTTGAGAAACACAATGATATTTGTGCCATCTGTTATCAGGACATGAAATCT
GCTGTGATCACGCCTTGCAGTCATTTTTTCCATGCAGGCTGTCTTAAGAAATGGCTGTATGTCCAGGAGA
CCTGCCCTCTGTGCCACTGCCATCTGAAAAACTCCTCCCAGCTTCCAGGATTAGGAACTGAGCCAGTTCT
ACAGCCTCATGCTGGAGCTGAGCAAAACGTCATGTTTCAGGAAGGTACTGAACCCCCAGGCCAGGAGCAT
ACTCCAGGGACCAGGATACAGGAAGGTTCCAGGGACAATAATGAGTACATTGCCAGACGACCAGATAACC
AGGAAGGGGCTTTTGACCCCAAAGAATATCCTCACAGTGCGAAAGATGAAGCACATCCTGTTGAATCAGC
CTAG

Translation (677 aa):
MVFSKKKKKKKKNNMAAKEKLEAVLNVALRVPSIMLLDVLYRWDVSSFFQQIQRSSLSNNPLFQYKYLAL
NMHYVGYILSVVLLTLPRQHLVQLYLYFLTALLLYAGHQISRDYVRSELEFAYEGPMYLEPLSMNRFTTA
LIGQLVVCTLCSCVMKTKQIWLFSAHMLPLLARLCLVPLETIVIINKFAMIFTGLEVLYFLGSNLLVPYN
LAKSAYRELVQVVEVYGLLALGMSLWNQLVVPVLFMVFWLVLFALQIYSYFSTRDQPASRERLLFLFLTS
IAECCSTPYSLLGLVFTVSFVALGVLTLCKFYLQGYRAFMNDPAMNRGMTEGVTLLILAVQTGLIELQVV
HRAFLLSIILFIVVASILQSMLEIADPIVLALGASRDKSLWKHFRAVSLCLFLLVFPAYMAYMICQFFHM
DFWLLIIISSSILTSLQVLGTLFIYVLFMVEEFRKEPVENMDDVIYYVNGTYRLLEFLVALCVVAYGVSE
TIFGEWTVMGSMIIFIHSYYNVWLRAQLGWKSFLLRRDAVNKIKSLPIATKEQLEKHNDICAICYQDMKS
AVITPCSHFFHAGCLKKWLYVQETCPLCHCHLKNSSQLPGLGTEPVLQPHAGAEQNVMFQEGTEPPGQEH
TPGTRIQEGSRDNNEYIARRPDNQEGAFDPKEYPHSAKDEAHPVESA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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