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Report for CCDS56390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56390.1 Public Homo sapiens 5 RNF145 24 110 108 CCDS HistoryNCBI Gene:153830Re-query CCDS DB by CCDS ID:56390.1Re-query CCDS DB by GeneID:153830See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56390.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424310.7 ENSP00000409064.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424310.7Link to Ensembl Protein Viewer:ENSP00000409064.2Re-query CCDS DB by Nucleotide ID:ENST00000424310Re-query CCDS DB by Protein ID:ENSP00000409064
Original member Current member EBI ENST00000519865.5 ENSP00000430397.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519865.5Link to Ensembl Protein Viewer:ENSP00000430397.1Re-query CCDS DB by Nucleotide ID:ENST00000519865Re-query CCDS DB by Protein ID:ENSP00000430397
Original member Current member EBI ENST00000611185.4 ENSP00000482720.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611185.4Link to Ensembl Protein Viewer:ENSP00000482720.1Re-query CCDS DB by Nucleotide ID:ENST00000611185Re-query CCDS DB by Protein ID:ENSP00000482720
Original member Current member NCBI NM_001199383.2 NP_001186312.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199383.2Link to Protein Sequence:NP_001186312.1Re-query CCDS DB by Nucleotide ID:NM_001199383Re-query CCDS DB by Protein ID:NP_001186312Link to BLAST:NP_001186312.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186312.1 663 Q96MT1-1 663 100% 0 0

Chromosomal Locations for CCDS 56390.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 159158670 159159035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159161266 159161622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159162932 159163079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159168873 159169055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159169679 159169819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159173983 159174158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159176632 159176867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159181960 159182051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159194716 159194824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 159203434 159203617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGCTGCAAAGGAGAAACTGGAGGCAGTGTTAAATGTGGCCCTGAGGGTGCCAAGCATCATGCTGTTGG
ATGTCCTGTACAGATGGGATGTCAGCTCCTTTTTCCAGCAGATCCAAAGAAGTAGCCTTAGTAATAACCC
TCTTTTCCAGTATAAGTATTTGGCTCTTAATATGCATTATGTAGGTTATATCTTAAGTGTGGTGCTGCTA
ACATTGCCCAGGCAGCATCTGGTTCAGCTTTATCTATATTTTTTGACTGCTCTGCTCCTCTATGCTGGAC
ATCAAATTTCCAGGGACTATGTTCGGAGTGAACTGGAGTTTGCCTATGAGGGACCAATGTATTTAGAACC
TCTCTCTATGAATCGGTTTACCACAGCCTTAATAGGTCAGTTGGTGGTGTGTACTTTATGCTCCTGTGTC
ATGAAAACAAAGCAGATTTGGCTGTTTTCAGCTCACATGCTTCCTCTGCTAGCACGACTCTGCCTTGTTC
CTTTGGAGACAATTGTTATCATCAATAAATTTGCTATGATTTTTACTGGATTGGAAGTTCTCTATTTTCT
TGGGTCTAATCTTTTGGTACCTTATAACCTTGCTAAATCTGCATACAGAGAATTGGTTCAGGTAGTGGAG
GTATATGGCCTTCTCGCCTTGGGAATGTCCCTGTGGAATCAACTGGTAGTCCCTGTTCTTTTCATGGTTT
TCTGGCTCGTCTTATTTGCTCTTCAGATTTACTCCTATTTCAGTACTCGAGATCAGCCTGCATCACGTGA
GAGGCTTCTTTTCCTTTTTCTGACAAGTATTGCGGAATGCTGCAGCACTCCTTACTCTCTTTTGGGTTTG
GTCTTCACGGTTTCTTTTGTTGCCTTGGGTGTTCTCACACTCTGCAAGTTTTACTTGCAGGGTTATCGAG
CTTTCATGAATGATCCTGCCATGAATCGGGGCATGACAGAAGGAGTAACGCTGTTAATCCTGGCAGTGCA
GACTGGGCTGATAGAACTGCAGGTTGTTCATCGGGCATTCTTGCTCAGTATTATCCTTTTCATTGTCGTA
GCTTCTATCCTACAGTCTATGTTAGAAATTGCAGATCCTATTGTTTTGGCACTGGGAGCATCTAGAGACA
AGAGCTTGTGGAAACACTTCCGTGCTGTAAGCCTTTGTTTATTTTTATTGGTATTCCCTGCTTATATGGC
TTATATGATTTGCCAGTTTTTCCACATGGATTTTTGGCTTCTTATCATTATTTCCAGCAGCATTCTTACC
TCTCTTCAGGTTCTGGGAACACTTTTTATTTATGTCTTATTTATGGTTGAGGAATTCAGAAAAGAGCCAG
TGGAAAACATGGATGATGTCATCTACTATGTGAATGGCACTTACCGCCTGCTGGAGTTTCTTGTGGCCCT
CTGTGTGGTGGCCTATGGCGTCTCAGAGACCATCTTTGGAGAATGGACAGTGATGGGCTCAATGATCATC
TTCATTCATTCCTACTATAACGTGTGGCTTCGGGCCCAGCTGGGGTGGAAGAGCTTTCTTCTCCGCAGGG
ATGCTGTGAATAAGATTAAATCGTTACCCATTGCTACGAAAGAGCAGCTTGAGAAACACAATGATATTTG
TGCCATCTGTTATCAGGACATGAAATCTGCTGTGATCACGCCTTGCAGTCATTTTTTCCATGCAGGCTGT
CTTAAGAAATGGCTGTATGTCCAGGAGACCTGCCCTCTGTGCCACTGCCATCTGAAAAACTCCTCCCAGC
TTCCAGGATTAGGAACTGAGCCAGTTCTACAGCCTCATGCTGGAGCTGAGCAAAACGTCATGTTTCAGGA
AGGTACTGAACCCCCAGGCCAGGAGCATACTCCAGGGACCAGGATACAGGAAGGTTCCAGGGACAATAAT
GAGTACATTGCCAGACGACCAGATAACCAGGAAGGGGCTTTTGACCCCAAAGAATATCCTCACAGTGCGA
AAGATGAAGCACATCCTGTTGAATCAGCCTAG

Translation (663 aa):
MAAKEKLEAVLNVALRVPSIMLLDVLYRWDVSSFFQQIQRSSLSNNPLFQYKYLALNMHYVGYILSVVLL
TLPRQHLVQLYLYFLTALLLYAGHQISRDYVRSELEFAYEGPMYLEPLSMNRFTTALIGQLVVCTLCSCV
MKTKQIWLFSAHMLPLLARLCLVPLETIVIINKFAMIFTGLEVLYFLGSNLLVPYNLAKSAYRELVQVVE
VYGLLALGMSLWNQLVVPVLFMVFWLVLFALQIYSYFSTRDQPASRERLLFLFLTSIAECCSTPYSLLGL
VFTVSFVALGVLTLCKFYLQGYRAFMNDPAMNRGMTEGVTLLILAVQTGLIELQVVHRAFLLSIILFIVV
ASILQSMLEIADPIVLALGASRDKSLWKHFRAVSLCLFLLVFPAYMAYMICQFFHMDFWLLIIISSSILT
SLQVLGTLFIYVLFMVEEFRKEPVENMDDVIYYVNGTYRLLEFLVALCVVAYGVSETIFGEWTVMGSMII
FIHSYYNVWLRAQLGWKSFLLRRDAVNKIKSLPIATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGC
LKKWLYVQETCPLCHCHLKNSSQLPGLGTEPVLQPHAGAEQNVMFQEGTEPPGQEHTPGTRIQEGSRDNN
EYIARRPDNQEGAFDPKEYPHSAKDEAHPVESA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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