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Report for CCDS56270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56270.1 Public Homo sapiens 3 ILDR1 24 110 108 CCDS HistoryNCBI Gene:286676Re-query CCDS DB by CCDS ID:56270.1Re-query CCDS DB by GeneID:286676See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393631.5 ENSP00000377251.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393631.5Link to Ensembl Protein Viewer:ENSP00000377251.1Re-query CCDS DB by Nucleotide ID:ENST00000393631Re-query CCDS DB by Protein ID:ENSP00000377251
Original member Current member NCBI NM_001199800.2 NP_001186729.1 Accepted alive Link to Nucleotide Sequence:NM_001199800.2Link to Protein Sequence:NP_001186729.1Re-query CCDS DB by Nucleotide ID:NM_001199800Re-query CCDS DB by Protein ID:NP_001186729Link to BLAST:NP_001186729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186729.1 457 Q86SU0-5 457 100% 0 0

Chromosomal Locations for CCDS 56270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121988367 121988408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121993150 121993970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121994182 121994313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122005244 122005393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122006991 122007161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122022020 122022077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGCATGGCCCAAACTGCCCGCACCTTGGCTGCTGCTCTGCACCTGGCTCCCAGCAGGGTGCCTGTCCT
TGCTTGTGACGGTCCAGCACACAGAACGCTATGTCACCCTGTTTGCCTCTATCATCCTCAAATGTGACTA
CACCACCTCTGCCCAGCTCCAGGACGTGGTGGTGACATGGCGCTTCAAGTCCTTCTGCAAGGACCCTATC
TTTGACTACTACTCAGCGTCATACCAGGCAGCTTTATCCCTGGGCCAGGACCCATCCAATGACTGCAACG
ACAACCAGCGGGAAGTTCGCATAGTGGCCCAGCGGCGGGGGCAGAATGAGCCCGTGCTGGGGGTAGATTA
CCGGCAGCGCAAGATCACCATCCAGAACCCCCTGGCCCGCCACCGCTACATGAAGCAGGCCCAGGCCCTA
GGTCCTCAGATGATGGGAAAACCCCTGTACTGGGGGGCGGACAGGAGCTCCCAGGTTTCATCTTATCCAA
TGCACCCGCTGCTGCAGCGAGATTTGTCCCTGCCGTCCAGCCTCCCGCAGATGCCAATGACCCAGACCAC
CAATCAGCCTCCCATCGCCAATGGTGTCCTGGAGTATTTGGAGAAAGAACTGCGGAACCTCAACCTGGCC
CAGCCTCTGCCCCCTGACCTCAAAGGCAGATTTGGCCATCCCTGCAGCATGCTGTCCTCCCTGGGCTCTG
AGGTCGTGGAACGCAGAATCATCCACCTGCCCCCACTGATCAGAGACCTGTCATCCTCAAGGAGGACCAG
TGACTCCCTGCACCAGCAGTGGCTCACCCCAATTCCCTCCAGGCCCTGGGATCTGAGGGAGGGGAGAAGC
CACCACCATTACCCTGATTTCCACCAGGAGCTCCAGGACCGGGGGCCAAAGTCTTGGGCATTGGAAAGAA
GGGAGTTGGACCCATCGTGGAGTGGAAGGCACCGTAGCTCTAGGCTGAATGGGTCACCCATACACTGGTC
AGACAGGGACAGCCTAAGCGATGTCCCCTCATCCAGTGAGGCACGCTGGCGGCCGAGCCACCCTCCTTTC
AGGAGCCGCTGTCAGGAGAGGCCCCGCAGGCCCAGCCCCCGGGAGAGCACTCAGAGGCACGGGAGACGAC
GCAGGCACCGCAGCTACTCTCCTCCCTTGCCCTCCGGCCTCAGTTCCTGGAGCTCTGAAGAGGACAAGGA
GAGGCAGCCCCAGAGCTGGCGGGCCCACCGCCGCGGCTCGCACTCCCCACACTGGCCCGAGGAGAAGCCG
CCTAGCTACCGCTCACTTGATATCACTCCAGGCAAGAATAGCAGGAAAAAAGGGAGTGTGGAGAGGCGCT
CGGAGAAAGACAGCTCTCATAGTGGAAGGAGTGTGGTCATTTAG

Translation (457 aa):
MAWPKLPAPWLLLCTWLPAGCLSLLVTVQHTERYVTLFASIILKCDYTTSAQLQDVVVTWRFKSFCKDPI
FDYYSASYQAALSLGQDPSNDCNDNQREVRIVAQRRGQNEPVLGVDYRQRKITIQNPLARHRYMKQAQAL
GPQMMGKPLYWGADRSSQVSSYPMHPLLQRDLSLPSSLPQMPMTQTTNQPPIANGVLEYLEKELRNLNLA
QPLPPDLKGRFGHPCSMLSSLGSEVVERRIIHLPPLIRDLSSSRRTSDSLHQQWLTPIPSRPWDLREGRS
HHHYPDFHQELQDRGPKSWALERRELDPSWSGRHRSSRLNGSPIHWSDRDSLSDVPSSSEARWRPSHPPF
RSRCQERPRRPSPRESTQRHGRRRRHRSYSPPLPSGLSSWSSEEDKERQPQSWRAHRRGSHSPHWPEEKP
PSYRSLDITPGKNSRKKGSVERRSEKDSSHSGRSVVI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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