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Report for CCDS56153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56153.1 Public Homo sapiens 2 GTF3C3 24 110 108 CCDS HistoryNCBI Gene:9330Re-query CCDS DB by CCDS ID:56153.1Re-query CCDS DB by GeneID:9330See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56153.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409364.3 ENSP00000386465.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409364.3Link to Ensembl Protein Viewer:ENSP00000386465.3Re-query CCDS DB by Nucleotide ID:ENST00000409364Re-query CCDS DB by Protein ID:ENSP00000386465
Original member Current member NCBI NM_001206774.2 NP_001193703.1 Accepted alive Link to Nucleotide Sequence:NM_001206774.2Link to Protein Sequence:NP_001193703.1Re-query CCDS DB by Nucleotide ID:NM_001206774Re-query CCDS DB by Protein ID:NP_001193703Link to BLAST:NP_001193703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193703.1 413 Q9Y5Q9-2 413 100% 0 0

Chromosomal Locations for CCDS 56153.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 196780535 196780662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196784857 196784929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196785441 196785588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196789204 196789369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196789879 196790070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196791337 196791460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196792956 196793152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196797797 196797908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196799510 196799611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGTCAGGGTTCAGTCCGGAACTCATCGACTACTTGGAAGGGAAAATCTCCTTTGAGGAGTTCGAACGGC
GGAGAGAAGAGAGAAAAACCCGCGAGAAGAAAAGTCTTCAGGAAAAAGGCAAGTTATCAGCTGAAGAAAA
TCCCGATGACTCTGAAGTTCCATCATCATCAGGAATTAACTCTACCAAATCCCAAGACAAAGATGTCAAT
GAAGGAGAAACATCAGATGGAGTGAGGAAGTCAGTTCACAAGGTCTTTGCTTCCATGCTTGGAGAGAATG
AAGATGATGAGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAACACCTGAGCAACCCAC
TGCGGGCGATGTATTTGTATTGGAGATGGTTCTCAATCGTGAAACCAAGAAAATGATGAAAGAGAAAAGG
CCTCGGAGTAAACTTCCCAGAGCTCTGAGAGGTCTCATGGGTGAAGCCAACATTCGTTTTGCTCGAGGAG
AACGTGAAGAGGCGATATTGATGTGCATGGAAATCATAAGACAAGCTCCTCTGGCTTATGAGCCATTCTC
TACTCTAGCCATGATATATGAGGACCAAGGTGACATGGAAAAATCATTGCAGTTTGAGTTGATTGCTGCG
CATTTAAATCCCAGTGACACAGAAGAATGGGTTAGACTGGCAGAAATGTCTCTGGAACAAGACAATATTA
AGCAGGCTATTTTTTGCTATACAAAAGCTCTTAAATATGAACCTACTAATGTCCGTTATCTGTGGGAGCG
ATCAAGCCTTTATGAACAGATGGGTGATCATAAAATGGCCATGGATGGTTATAGGCGTATTTTAAACCTT
TTGTCTCCATCTGATGGCGAACGTTTTATGCAGCTGGCTAGAGATATGGCAAAGAGTTACTATGAAGCCA
ATGATGTTACTTCTGCTATTAACATAATTGATGAAGCTTTCTCAAAACACCAGGGCCTAGTCTCCATGGA
AGATGTTAACATAGCAGCTGAACTATATATTTCTAACAAACAGTATGACAAAGCTTTGGAGATAATTACA
GATTTTTCTGGAATTGTGCTGGAAAAAAAAACTTCAGAAGAAGGCACCTCAGAAGAGAATAAAGCTCCTG
AGAATGTTACCTGCACTATACCTGATGGCGTGCCAATAGATATCACAGTGAAGTTGATGGTCTGCCTTGT
ACATCTCAACATTCTTGAACCACTTAATGTATGTAACAAGATCTGCACTTGA

Translation (413 aa):
MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGINSTKSQDKDVN
EGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGDVFVLEMVLNRETKKMMKEKR
PRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAA
HLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNL
LSPSDGERFMQLARDMAKSYYEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIIT
DFSGIVLEKKTSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNVCNKICT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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