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Report for CCDS56120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56120.1 Public Homo sapiens 2 FAM161A 24 110 108 CCDS HistoryNCBI Gene:84140Re-query CCDS DB by CCDS ID:56120.1Re-query CCDS DB by GeneID:84140See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56120.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404929.6 ENSP00000385158.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404929.6Link to Ensembl Protein Viewer:ENSP00000385158.1Re-query CCDS DB by Nucleotide ID:ENST00000404929Re-query CCDS DB by Protein ID:ENSP00000385158
Original member Current member NCBI NM_001201543.2 NP_001188472.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001201543.2Link to Protein Sequence:NP_001188472.1Re-query CCDS DB by Nucleotide ID:NM_001201543Re-query CCDS DB by Protein ID:NP_001188472Link to BLAST:NP_001188472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188472.1 716 Q3B820-3 716 100% 0 0

Chromosomal Locations for CCDS 56120.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 61826455 61826599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61827104 61827258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61836010 61836109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61838538 61838705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61839421 61840581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61842122 61842360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61853859 61854041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGCCACCTCCCACCGAGTGGCGAAGCTGGTGGCCTCCAGTCTCCAGACCCCGGTAAATCCCATCACTG
GA
GCGCGGGTCGCCCAGTACGAACGCGAAGACCCCTTAAAGGCCCTGGCGGCAGCGGAGGCGATCTTGGA
G
GACGAAGAGGAGGAGAAAGTGGCTCAGCCCGCTGGGGCATCGGCTGATTTGAACACCAGCTTTTCTGGG
GTG
GATGAACATGCACCGATAAGCTATGAGGACTTTGTGAACTTTCCTGATATTCACCACTCTAATGAGG
AG
TATTTCAAGAAAGTAGAAGAGTTGAAGGCTGCCCACATAGAAACTATGGCAAAATTAGAGAAAATGTA
C
CAGGATAAATTACATTTAAAGGAAGTTCAGCCAGTGGTCATCAGAGAAGACTCTCTTAGTGACTCTTCC
AG
A
TCTGTATCAGAAAAGAACTCCTATCACCCTGTCTCATTAATGACATCATTTTCAGAGCCTGATTTAG
GC
CAGTCTTCCTCCTTGTATGTGTCCTCCTCTGAAGAGGAGTTACCCAACCTAGAAAAAGAGTATCCTAG
G
AAAAACAGAATGATGACCTATGCTAAGGAGCTCATCAACAATATGTGGACAGACTTTTGTGTTGAGGAT
TAT
ATTCGCTGTAAAGATACTGGCTTCCATGCAGCTGAAAAAAGAAGGAAGAAACGAAAAGAATGGGTGC
CC
ACAATTACAGTACCGGAGCCTTTTCAAATGATGATAAGAGAACAGAAGAAAAAAGAAGAGTCCATGAA
A
TCTAAATCAGATATCGAAATGGTACATAAAGCGCTCAAAAAACAAGAAGAGGATCCAGAGTATAAGAAG
AAA
TTCCGAGCCAATCCAGTTCCTGCATCTGTCTTTCTCCCCCTTTACCATGATTTAGTCAAGCAAAAAG
AA
GAACGGAGAAGGTCTCTGAAGGAGAAAAGCAAAGAAGCTCTTTTGGCCTCACAAAAGCCATTTAAATT
T
ATAGCAAGGGAGGAACAGAAGCGAGCAGCCCGGGAAAAGCAGCTGAGAGACTTTCTTAAGTATAAAAAG
AAA
ACAAATCGATTTAAAGCCAGACCCATTCCTCGATCTACTTATGGTTCAACTACCAATGACAAGTTAA
AA
GAAGAAGAGCTCTATCGAAACCTTAGGACACAGCTGAGAGCCCAGGAGCATTTACAGAACTCATCTCC
T
CTGCCTTGTAGGTCAGCTTGTGGATGCAGGAACCCCAGGTGTCCTGAACAGGCTGTAAAGTTGAAGTGT
AAA
CACAAGGTTAGGTGCCCAACTCCTGATTTTGAGGACCTTCCTGAGAGATACCAGAAACACCTCTCAG
AA
CACAAGTCTCCAAAACTCTTAACAGTGTGTAAACCATTTGATCTTCATGCATCTCCACATGCATCTAT
T
AAAAGAGAAAAAATTTTGGCAGACATCGAAGCAGATGAAGAAAATTTAAAAGAAACACGTTGGCCTTAT
TTG
TCTCCAAGGCGTAAGTCACCAGTAAGATGTGCAGGTGTAAACCCTGTGCCTTGTAACTGCAACCCTC
CC
GTGCCCACGGTATCTTCCAGAGGACGAGAACAAGCCGTAAGGAGATCACTTGAGGAAAAGAAAATGTT
G
GAAGAAGAGAGAAATCGGATCCTAACTAAACAGAAGCAAAGAATGAAAGAATTGCAGAAACTCCTGACA
ACC
CGGGCTAAGGCTTATGACTCACATCAAAGTTTAGCTCAAATATCTAAATCCAGAGTAAAATGTCTCA
G
A
AAGAGCGAAAAGGAAAGGATGAGAGAATACCAACGAGAACTAGAAGAAAGAGAAGAAAAATTAAAAAA
G
AGGCCACTGCTATTTGAAAGAGTTGCTCAGAAAAATGCAAGAATGGCAGCAGAAAAGCATTATTCTAAT
ACC
CTAAAAGCACTAGGAATATCTGATGAGTTTGTTTCAAAGAAAGGCCAAAGTGGAAAAGTACTTGAGT
AC
TTCAACAATCAAGAGACGAAAAGTGTCACTGAAGACAAAGAAAGCTTTAATGAAGAAGAAAAAATAGA
A
GAAAGAGAGAATGGGGAAGAAAATTATTTTATTGATACCAACAGCCAGGATTCTTACAAGGAAAAAGAT
GAA
GCCAATGAGGAAAGTGAAGAAGAGAAATCTGTTGAAGAATCACACTGA


Translation (716 aa):
MATSHRVAKLVASSLQTPVNPITGARVAQYEREDPLKALAAAEAILEDEEEEKVAQPAGASADLNTSFSG
V
DEHAPISYEDFVNFPDIHHSNEEYFKKVEELKAAHIETMAKLEKMYQDKLHLKEVQPVVIREDSLSDSS

R
SVSEKNSYHPVSLMTSFSEPDLGQSSSLYVSSSEEELPNLEKEYPRKNRMMTYAKELINNMWTDFCVED
Y
IRCKDTGFHAAEKRRKKRKEWVPTITVPEPFQMMIREQKKKEESMKSKSDIEMVHKALKKQEEDPEYKK
K
FRANPVPASVFLPLYHDLVKQKEERRRSLKEKSKEALLASQKPFKFIAREEQKRAAREKQLRDFLKYKK
K
TNRFKARPIPRSTYGSTTNDKLKEEELYRNLRTQLRAQEHLQNSSPLPCRSACGCRNPRCPEQAVKLKC
K
HKVRCPTPDFEDLPERYQKHLSEHKSPKLLTVCKPFDLHASPHASIKREKILADIEADEENLKETRWPY
L
SPRRKSPVRCAGVNPVPCNCNPPVPTVSSRGREQAV
RRSLEEKKMLEEERNRILTKQKQRMKELQKLLT
T
RAKAYDSHQSLAQISKSRVKCL
RKSEKERMREYQRELEEREEKLKKRPLLFERVAQKNARMAAEKHYSN
T
LKALGISDEFVSKKGQSGKVLEYFNNQETKSVTEDKE
SFNEEEKIEERENGEENYFIDTNSQDSYKEKD
E
ANEESEEEKSVEESH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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