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Report for CCDS56106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56106.1 Public Homo sapiens 19 ZNF549 24 110 108 CCDS HistoryNCBI Gene:256051Re-query CCDS DB by CCDS ID:56106.1Re-query CCDS DB by GeneID:256051See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376233.8 ENSP00000365407.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376233.8Link to Ensembl Protein Viewer:ENSP00000365407.2Re-query CCDS DB by Nucleotide ID:ENST00000376233Re-query CCDS DB by Protein ID:ENSP00000365407
Original member Current member NCBI NM_001199295.2 NP_001186224.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199295.2Link to Protein Sequence:NP_001186224.2Re-query CCDS DB by Nucleotide ID:NM_001199295Re-query CCDS DB by Protein ID:NP_001186224Link to BLAST:NP_001186224.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186224.2 640 Q6P9A3-1 640 100% 0 0

Chromosomal Locations for CCDS 56106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57527574 57527606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57531070 57531108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57535144 57535270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57537204 57538927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGCCGAGGCAGCGCTAGTGATTACGCCGCAGATTCCCATGGTAACAGAAGAGTTTGTGAAACCATCAC
AGGGCCATGTGACCTTTGAGGATATTGCTGTGTACTTCTCCCAGGAGGAGTGGGGCCTCCTTGATGAAGC
TCAAAGGTGCCTGTATCATGATGTGATGCTGGAGAACTTTTCGCTTATGGCCTCAGTAGGTTGTTTGCAT
GGAATAGAGGCTGAGGAGGCCCCTTCTGAGCAGACTCTTTCTGCGCAAGGAGTGTCACAGGCCAGGACTC
CAAAGCTAGGTCCTTCCATCCCAAATGCTCATTCTTGTGAGATGTGTATCCTGGTCATGAAAGACATTTT
GTACCTCAGTGAGCATCAGGGGACACTTCCCTGGCAGAAACCTTATACGTCTGTGGCCAGTGGGAAATGG
TTTTCATTTGGTTCTAACCTGCAACAGCACCAGAACCAGGACAGTGGAGAGAAACACATCAGAAAGGAGG
AGAGCAGTGCCTTGCTTCTGAATAGCTGCAAAATTCCTCTGTCAGACAATCTTTTCCCATGCAAAGATGT
TGAGAAGGATTTTCCAACCATCCTGGGCCTTCTCCAACACCAGACCACCCACAGCAGACAAGAGTATGCA
CATAGAAGCAGGGAGACCTTTCAACAAAGACGTTACAAATGTGAGCAAGTTTTCAATGAGAAAGTTCATG
TTACTGAGCATCAGAGAGTCCACACTGGAGAAAAAGCTTATAAGCGTAGGGAATATGGGAAATCCTTGAA
CTCTAAATACTTATTTGTTGAACACCAGAGAACCCATAATGCAGAAAAGCCTTATGTGTGCAATATATGT
GGGAAATCATTCCTCCATAAACAAACACTCGTTGGGCACCAGCAGAGAATTCACACTAGAGAAAGGTCTT
ATGTGTGCATCGAATGTGGGAAATCCTTGAGCTCCAAATACTCACTTGTGGAACACCAGAGAACCCATAA
TGGAGAAAAGCCTTATGTGTGCAATGTATGTGGGAAATCATTCCGCCACAAACAAACATTTGTTGGCCAT
CAGCAGAGAATCCACACTGGAGAGAGGCCTTATGTGTGTATGGAATGTGGGAAATCTTTTATTCATTCCT
ATGACCGCATTCGACACCAGAGAGTTCACACTGGAGAAGGGGCTTATCAGTGCAGTGAATGTGGGAAATC
CTTCATATACAAACAGTCACTTCTTGATCACCATAGAATCCACACGGGAGAAAGGCCTTATGAGTGCAAA
GAATGTGGGAAGGCCTTCATTCACAAAAAAAGACTTCTTGAGCACCAGAGAATTCATACTGGAGAAAAGC
CTTATGTGTGCATCATATGTGGGAAATCATTTATCCGCTCGTCTGACTACATGCGACACCAGAGAATTCA
CACTGGAGAAAGGGCTTATGAATGCAGTGACTGTGGGAAAGCCTTCATCTCCAAACAAACACTTCTTAAG
CATCACAAAATCCACACTAGAGAAAGGCCTTATGAATGCAGTGAATGTGGAAAAGGCTTCTACCTTGAGG
TTAAACTTCTTCAGCACCAAAGAATCCATACTAGAGAACAACTTTGTGAGTGCAATGAATGTGGAAAAGT
CTTCAGCCACCAAAAAAGACTTCTTGAGCACCAGAAAGTTCACACTGGCGAAAAGCCCTGTGAGTGCAGT
GAATGTGGGAAATGCTTTAGACACCGCACCAGCCTCATTCAACACCAGAAAGTTCACAGTGGAGAGAGGC
CTTATAACTGCACTGCATGTGAGAAGGCCTTTATCTATAAAAACAAACTTGTTGAGCATCAGCGAATCCA
CACCGGAGAAAAGCCGTATGAATGTGGTAAATGTGGGAAAGCCTTCAACAAAAGATATTCCCTTGTCAGG
CACCAGAAGGTACATATAACAGAAGAGCCCTAG

Translation (640 aa):
MAEAALVITPQIPMVTEEFVKPSQGHVTFEDIAVYFSQEEWGLLDEAQRCLYHDVMLENFSLMASVGCLH
GIEAEEAPSEQTLSAQGVSQARTPKLGPSIPNAHSCEMCILVMKDILYLSEHQGTLPWQKPYTSVASGKW
FSFGSNLQQHQNQDSGEKHIRKEESSALLLNSCKIPLSDNLFPCKDVEKDFPTILGLLQHQTTHSRQEYA
HRSRETFQQRRYKCEQVFNEKVHVTEHQRVHTGEKAYKRREYGKSLNSKYLFVEHQRTHNAEKPYVCNIC
GKSFLHKQTLVGHQQRIHTRERSYVCIECGKSLSSKYSLVEHQRTHNGEKPYVCNVCGKSFRHKQTFVGH
QQRIHTGERPYVCMECGKSFIHSYDRIRHQRVHTGEGAYQCSECGKSFIYKQSLLDHHRIHTGERPYECK
ECGKAFIHKKRLLEHQRIHTGEKPYVCIICGKSFIRSSDYMRHQRIHTGERAYECSDCGKAFISKQTLLK
HHKIHTRERPYECSECGKGFYLEVKLLQHQRIHTREQLCECNECGKVFSHQKRLLEHQKVHTGEKPCECS
ECGKCFRHRTSLIQHQKVHSGERPYNCTACEKAFIYKNKLVEHQRIHTGEKPYECGKCGKAFNKRYSLVR
HQKVHITEEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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