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Report for CCDS56022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56022.1 Public Homo sapiens 17 COPS3 24 110 108 CCDS HistoryNCBI Gene:8533Re-query CCDS DB by CCDS ID:56022.1Re-query CCDS DB by GeneID:8533See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56022.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539941.6 ENSP00000437606.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539941.6Link to Ensembl Protein Viewer:ENSP00000437606.2Re-query CCDS DB by Nucleotide ID:ENST00000539941Re-query CCDS DB by Protein ID:ENSP00000437606
Original member Current member NCBI NM_001199125.1 NP_001186054.1 Accepted alive Link to Nucleotide Sequence:NM_001199125.1Link to Protein Sequence:NP_001186054.1Re-query CCDS DB by Nucleotide ID:NM_001199125Re-query CCDS DB by Protein ID:NP_001186054Link to BLAST:NP_001186054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186054.1 403 Q9UNS2-2 403 100% 0 0

Chromosomal Locations for CCDS 56022.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17247098 17247151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17247480 17247560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17248926 17249039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17254859 17254945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17260301 17260474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17261966 17262106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17264802 17264981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17267885 17267977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17270758 17270807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17270896 17271008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17276035 17276159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGACACAGCTTTGTGAACTGATCAACAAGAGTGGGGAACTCCTTGCGAAGAACTTATCCCATCTGGACA
CTGTGCTCGGGGCTCTGGATGTACAAGAACACTCCTTGGGCGTCCTTGCTGTTTTGTTTGTGAAGTTTTC
TATGCCCAGTGTTCCTGACTTCGAAACGCTATTCTCACAGGTTCAGCTCTTCATCAGCACTTGTAATGGG
GAGCACATTCGATATGCAACAGACACTTTTGCTGGGCTTTGCCATCAGCTAACAAATGCACTTGTGGAAA
GAAAACAGCCCCTGCGAGGAATTGGCATCCTTAAGCAAGCCATAGACAAGATGCAGATGAATACAAACCA
GCTGACCTCAATACATGCTGATCTCTGCCAGCTTTGTTTGCTAGCAAAATGCTTTAAGCCTGCCCTTCCA
TATCTTGACGTGGATATGATGGATATCTGTAAAGAGAATGGAGCCTATGATGCAAAACACTTTTTATGTT
ACTATTATTATGGAGGGATGATCTATACTGGGCTGAAGAACTTTGAAAGAGCTCTCTACTTTTATGAACA
GGCTATAACTACTCCTGCCATGGCGGTCAGTCATATCATGTTGGAATCATATAAAAAGTATATTTTAGTG
TCTTTGATATTACTTGGCAAAGTACAACAGCTACCAAAATATACATCTCAAATTGTGGGTAGATTCATTA
AGCCTCTTAGCAATGCATACCACGAGTTAGCACAAGTGTATTCAACCAACAACCCCTCAGAACTCCGAAA
CCTGGTGAATAAGCACAGTGAAACCTTCACTCGCGATAACAACATGGGGCTGGTGAAGCAATGCTTGTCA
TCTCTTTATAAGAAGAATATTCAGAGGCTAACAAAGACCTTTTTAACTCTATCATTACAAGATATGGCAA
GTCGTGTGCAGTTGTCTGGACCTCAGGAGGCAGAGAAATACGTTCTGCACATGATAGAAGATGGTGAGAT
TTTTGCAAGTATTAACCAGAAGGACGGTATGGTCAGTTTCCATGATAACCCTGAAAAATATAATAACCCA
GCCATGCTTCATAACATTGATCAGGAGATGCTGAAGTGCATTGAGCTGGATGAGCGGCTGAAAGCCATGG
ACCAGGAGATCACAGTGAACCCTCAGTTTGTACAAAAGAGTATGGGCTCACAAGAAGATGATTCAGGAAA
CAAACCATCCAGTTATTCTTGA

Translation (403 aa):
MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSVPDFETLFSQVQLFISTCNG
EHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALP
YLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILV
SLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNP
AMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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