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Report for CCDS55996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55996.1 Public Homo sapiens 16 NUP93 24 110 108 CCDS HistoryNCBI Gene:9688Re-query CCDS DB by CCDS ID:55996.1Re-query CCDS DB by GeneID:9688See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55996.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542526.5 ENSP00000440235.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542526.5Link to Ensembl Protein Viewer:ENSP00000440235.1Re-query CCDS DB by Nucleotide ID:ENST00000542526Re-query CCDS DB by Protein ID:ENSP00000440235
Original member Current member EBI ENST00000564887.5 ENSP00000458039.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564887.5Link to Ensembl Protein Viewer:ENSP00000458039.1Re-query CCDS DB by Nucleotide ID:ENST00000564887Re-query CCDS DB by Protein ID:ENSP00000458039
Original member Current member NCBI NM_001242795.2 NP_001229724.1 Accepted alive Link to Nucleotide Sequence:NM_001242795.2Link to Protein Sequence:NP_001229724.1Re-query CCDS DB by Nucleotide ID:NM_001242795Re-query CCDS DB by Protein ID:NP_001229724Link to BLAST:NP_001229724.1
Original member Current member NCBI NM_001242796.2 NP_001229725.1 Accepted alive Link to Nucleotide Sequence:NM_001242796.2Link to Protein Sequence:NP_001229725.1Re-query CCDS DB by Nucleotide ID:NM_001242796Re-query CCDS DB by Protein ID:NP_001229725Link to BLAST:NP_001229725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229724.1 696 Q8N1F7-2 696 100% 0 0
NP_001229725.1 696 Q8N1F7-2 696 100% 0 0

Chromosomal Locations for CCDS 55996.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 56805513 56805632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56818664 56818738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56821504 56821593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56823707 56823846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56828977 56829109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56830528 56830685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56831842 56832007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56832295 56832388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56833215 56833406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56834128 56834254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56834370 56834442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56834734 56834778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56836601 56836717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56837608 56837726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56838952 56839069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56839521 56839604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56841705 56841833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56844499 56844609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGCTGAGGAGTACCATCGGGAGTCAATGTTGGTTGAGTGGGAGCAAGTGAAACAGCGAATTCTGCACA
CACTGCTGGCATCAGGAGAAGACGCCCTTGACTTTACTCAAGAAAGCGAGCCAAGCTACATCAGTGATGT
GGGACCCCCTGGTCGAAGCTCTCTGGATAACATCGAGATGGCCTATGCGCGGCAAATTTATATCTATAAT
GAGAAAATTGTAAATGGACACCTGCAGCCTAACCTGGTGGACCTTTGTGCTTCCGTCGCAGAGCTCGATG
ATAAGAGCATTTCCGACATGTGGACCATGGTAAAACAAATGACAGACGTGTTGTTGACACCGGCAACGGA
TGCCCTGAAGAACCGCAGCAGCGTGGAAGTGCGCATGGAGTTTGTCAGGCAGGCCTTGGCGTACCTTGAG
CAGAGTTATAAGAATTACACCCTTGTGACTGTCTTTGGAAATTTGCATCAGGCCCAGCTGGGCGGGGTGC
CTGGGACTTACCAATTGGTTCGAAGTTTCCTGAACATTAAACTGCCAGCTCCCTTGCCTGGACTACAGGA
TGGAGAGGTGGAAGGCCATCCTGTGTGGGCGCTAATTTACTACTGCATGCGCTGTGGAGACCTGCTTGCC
GCTTCACAGGTAGTTAATCGAGCCCAGCACCAGCTGGGAGAGTTTAAAACCTGGTTCCAGGAGTACATGA
ACAGCAAGGACAGAAGATTGTCCCCAGCTACGGAAAACAAGCTCCGGCTGCATTACCGTAGGGCCCTCAG
GAACAATACAGATCCCTACAAGCGGGCCGTGTACTGTATCATTGGCAGATGTGACGTCACCGACAACCAG
AGTGAAGTGGCGGACAAAACTGAGGATTACCTGTGGCTGAAGTTGAACCAAGTGTGTTTTGACGACGATG
GCACCAGCTCCCCACAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAGTTGTTGGAAGACTATGGCGA
GTCCCACTTTACGGTGAACCAGCAACCCTTCCTCTACTTCCAAGTCCTGTTCCTGACAGCGCAGTTTGAA
GCAGCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCATGCTGTCCATGTAGCACTGGTGCTGT
TTGAGCTGAAGCTGCTTTTAAAGTCCTCTGGACAGAGTGCTCAGCTCCTCAGCCACGAGCCTGGTGACCC
TCCTTGCTTGCGGCGGCTGAACTTCGTGCGGCTCCTCATGCTGTACACCCGGAAGTTTGAGTCCACGGAC
CCAAGGGAGGCCCTCCAGTACTTCTATTTCCTCAGGGATGAGAAAGATAGTCAAGGAGAAAACATGTTTC
TGCGCTGTGTGAGTGAGCTTGTGATTGAAAGCCGAGAGTTCGATATGATTCTTGGGAAACTAGAGAATGA
CGGAAGTAGAAAGCCTGGAGTCATAGATAAGTTTACTAGTGACACAAAGCCTATTATCAACAAAGTTGCT
TCTGTGGCAGAAAATAAAGGACTGTTTGAAGAGGCAGCAAAGCTGTATGACCTTGCCAAGAATGCTGACA
AGGTACTGGAGCTGATGAACAAACTGCTGAGCCCTGTCGTCCCCCAGATCAGTGCCCCGCAATCCAACAA
GGAGAGGCTGAAGAACATGGCACTCTCCATTGCCGAACGGTATAGGGCTCAAGGAATAAGCGCAAATAAA
TTTGTGGACTCCACGTTCTATCTTCTTTTGGACTTGATCACCTTTTTTGACGAGTATCATAGTGGTCATA
TTGATAGAGCTTTTGATATCATTGAGCGCTTGAAGCTGGTGCCCCTGAATCAGGAAAGTGTGGAAGAGAG
AGTGGCTGCCTTCAGAAATTTCAGTGATGAAATCAGGCACAACCTCTCAGAAGTGCTTCTTGCCACCATG
AACATCTTGTTCACACAGTTTAAGAGGCTCAAGGGGACAAGTCCATCCTCGTCATCCAGGCCCCAGCGAG
TCATCGAGGACCGCGACTCTCAACTCCGAAGTCAAGCCCGCACTCTGATTACCTTTGCTGGAATGATACC
ATACCGAACGTCTGGGGACACCAATGCGAGGCTGGTGCAGATGGAGGTCCTCATGAATTAA

Translation (696 aa):
MAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDNIEMAYARQIYIYN
EKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLE
QSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLA
ASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQ
SEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFE
AAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFESTD
PREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVA
SVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANK
FVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATM
NILFTQFKRLKGTSPSSSSRPQRVIEDRDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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