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Report for CCDS55918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55918.1 Public Homo sapiens 14 SAMD4A 24 110 108 CCDS HistoryNCBI Gene:23034Re-query CCDS DB by CCDS ID:55918.1Re-query CCDS DB by GeneID:23034See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55918.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000555192.1 ENSP00000450808.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555192.1Link to Ensembl Protein Viewer:ENSP00000450808.1Re-query CCDS DB by Nucleotide ID:ENST00000555192Re-query CCDS DB by Protein ID:ENSP00000450808
Original member Current member EBI ENST00000631086.2 ENSP00000486821.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000631086.2Link to Ensembl Protein Viewer:ENSP00000486821.1Re-query CCDS DB by Nucleotide ID:ENST00000631086Re-query CCDS DB by Protein ID:ENSP00000486821
Original member Current member NCBI NM_001161577.2 NP_001155049.1 Accepted alive Link to Nucleotide Sequence:NM_001161577.2Link to Protein Sequence:NP_001155049.1Re-query CCDS DB by Nucleotide ID:NM_001161577Re-query CCDS DB by Protein ID:NP_001155049Link to BLAST:NP_001155049.1

Chromosomal Locations for CCDS 55918.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54760212 54760494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54764455 54764540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54770104 54770222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54774934 54775135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54776414 54776540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54784340 54784447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54784537 54784620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54788916 54788944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGATCCTGACTCCGATCAAGGCCTACAGCTCCCCGAGCACCACCCCCGAGGCTCGCCGCCGGGAGCCCC
AGGCCCCGCGTCAGCCCTCACTGATGGGCCCCGAGAGCCAGAGCCCCGACTGCAAAGATGGGGCCGCAGC
CACTGGCGCCACGGCCACCCCCTCGGCCGGGGCCAGCGGGGGGCTCCAGCCGCACCAGCTGAGCAGCTGC
GATGGGGAGCTGGCCGTCGCCCCCCTGCCAGAGGGGGACCTCCCCGGGCAGTTCACACGCGTCATGGGGA
AAGTGTGCACACAGCTCTTGGTCTCCAGACCTGATGAGGAAAATATAAGTTCCTATTTACAGCTCATAGA
CAAGTGTCTAATTCATGAGGCATTTACAGAGACACAGAAAAAAAGATTGTTGTCATGGAAACAGCAGGTG
CAGAAGCTCTTTCGGTCTTTCCCTCGGAAAACCCTTCTAGACATATCAGGATATCGACAGCAAAGAAATC
GAGGCTTTGGGCAATCCAACTCCCTCCCGACGGCTGGCTCTGTGGGCGGTGGCATGGGCAGACGGAACCC
GCGCCAGTACCAGATCCCCTCTCGGAACGTCCCTTCCGCCCGCCTGGGCCTCTTGGGCACCAGTGGATTC
GTCAGCTCCAACCAGCGCAACACCACAGCTACCCCCACCATCATGAAACAAGGAAGACAGAACCTGTGGT
TTGCCAACCCCGGGGGCAGCAATAGCATGCCAAGCCGCACCCACAGCTCAGTCCAGAGGACCCGCTCGCT
GCCCGTGCACACTTCCCCACAGAACATGCTGATGTTCCAGCAGCCAGGTTCCCAAGTTCACAGTGGACTG
TGTTTAACAGACCTTAGAGGTTGGTTGAGCCTGAGTGGAGCCCCTTCCATGCCAGCGCTGACAGTCCCCA
AGTCCTCCCAGGGAGAATTCCAGCTTCCCGTGACCGAACCTGACATCAACAACAGGCTGGAGTCGTTGTG
CCTCAGTATGACCGAACACGCCCTGGGAGACGGGGTTGACCGGACCTCCACCATCTAG

Translation (345 aa):
MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSC
DGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQV
QKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGF
VSSNQRNTTATPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGL
CLTDLRGWLSLSGAPSMPALTVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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