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Report for CCDS55900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55900.1 Public Homo sapiens 13 FAM124A 24 110 108 CCDS HistoryNCBI Gene:220108Re-query CCDS DB by CCDS ID:55900.1Re-query CCDS DB by GeneID:220108See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322475.13 ENSP00000324625.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322475.13Link to Ensembl Protein Viewer:ENSP00000324625.8Re-query CCDS DB by Nucleotide ID:ENST00000322475Re-query CCDS DB by Protein ID:ENSP00000324625
Original member Current member NCBI NM_001242312.2 NP_001229241.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242312.2Link to Protein Sequence:NP_001229241.1Re-query CCDS DB by Nucleotide ID:NM_001242312Re-query CCDS DB by Protein ID:NP_001229241Link to BLAST:NP_001229241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229241.1 546 Q86V42-1 546 100% 0 0

Chromosomal Locations for CCDS 55900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51222502 51222569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51231348 51231379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51251468 51252201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51280450 51281256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGGACCCAAAGGCGGGCGGCGGCGGCGAGGAGGACGACTGCGTGGACTCGGGCGCCGAGACCGGAGGGT
CCGACTACAGCCACCTGTCCTCCACGAGCAGTGAGCTTTCCGTTGAAGAGGCGCAGGACCCTTTCCTGGT
CAGCATCCACATAATCGCAGACCCAGGGGAGTCCCAGCCCCTGCAGGAGGCCATCGACAACGTCCTGGCG
TGGATCCACCCCGACCTCCCGCTGTTCCGGGTGTCCGAGAGGCGGGCGTCCCGGCGGCGGCGGAAGCCCC
CCAAGGGCGCTCAGCCAGCGCTGGCTGTGGTGCTGTTCCTGCAGGAGGAGTACGGCGAAGAGCAGATCCT
GCAGCTGCACCGCACACTGCAGCAGCCGCCCTGGCGCCACCACCACACCGAGCAGGTGCACGGCCGGTTC
CTGCCCTACCTGCCCTGCAGCCAGGACTTCTTCACGCTGGCCCCTGGGACGCCGCTTTGGGCCATCCGGC
CCGTGCACTACGGCAAGGAAATCGTGCGCTTCACCGTCTACTGTCGCTACGACAACTATGCTGACAGCCT
CAGGTTCTACCAGCTGATTCTCCGGAGGAGCCCCAGCCAGAAGAAAGCGGACTTCTGCATCTTCCCTATT
TTTTCCAACCTGGATGTGGACATCCAGTTCTCCCTGAAAAGACTGCCCTGTGACCAGTGCCCGGTGCCCA
CCGACTCCTCCGTGCTGGAGTTCCGAGTGAGGGACATAGGCGAGCTCGTGCCTCTCCTGCCCAACCCTTG
CAGCCCCATCAGCGAGGGGCGCTGGCAGACGGAGGACCATGATGGGAACAAGATCCTCCTACAGGCACAA
AGGGTGCATAAGAAGTTTCCTAAACCTGGCAGAGTACATCATGCCTCCGAGAAGAAACGTCATTCCACTC
CTTTGCCGAGCACTGCTGTACCAAGCCATACACCTGGCAGCAGCCAGCAGTCCCCGCTCAACAGTCCTCA
CCCGGGGCCCATCCGGACAGGCCTGCCTCCTGGGCACCAGCAGGAATTTGCCGGACGAGCCAACAGCACC
CCCAACCCTCCCTGGTCTTTCCAGAGAAGCAAGTCCTTGTTTTGTTTGCCCACGGGAGGCCCCTCCCTGG
CCTCCTCAGCTGAACCACAGTGGTTTTCAAACACAGGTGCCCCAGGGCACAGGGCATCAGAGTGGAGGCA
TGGCCACCTCCTCTCCATCGATGACCTAGAGGGGGCCCAGGAGACAGACGTGGACACAGGCCTGCGGCTG
TCCTCATCGGACCTGTCTGTGGTCTCTGCATATTCTGCACCCAGTAGGTTCTGCAGCACAGTGGAGACAC
CCCTCCCCTCCGAAAGATGCAGCAGCCACTGGGCAGCTCACAAGGATTCCAGGGAGGGACCACTGCCCAC
TGTCAGCAGGGTGACCACAGAGGCCTCCTGGGCTTCCCTCCCTTTCTTCACCAAAAGGTCTTCCAGCTCC
TCAGCGACAGCTCGTGCTGCTCCCCCAGCTCCCAGCACCTCCACCCTCACAGACTCCTCCCCACAGCTCC
CATGCGATACCCCCAAAGTCAAGCAGACTGATGGAGACATGCCACCACCCCCAGGGTCGGCTGGCCCCGG
GGATAACGACATGGAGGAATTCTACATCTGA

Translation (546 aa):
MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQPLQEAIDNVLA
WIHPDLPLFRVSERRASRRRRKPPKGAQPALAVVLFLQEEYGEEQILQLHRTLQQPPWRHHHTEQVHGRF
LPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRYDNYADSLRFYQLILRRSPSQKKADFCIFPI
FSNLDVDIQFSLKRLPCDQCPVPTDSSVLEFRVRDIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQAQ
RVHKKFPKPGRVHHASEKKRHSTPLPSTAVPSHTPGSSQQSPLNSPHPGPIRTGLPPGHQQEFAGRANST
PNPPWSFQRSKSLFCLPTGGPSLASSAEPQWFSNTGAPGHRASEWRHGHLLSIDDLEGAQETDVDTGLRL
SSSDLSVVSAYSAPSRFCSTVETPLPSERCSSHWAAHKDSREGPLPTVSRVTTEASWASLPFFTKRSSSS
SATARAAPPAPSTSTLTDSSPQLPCDTPKVKQTDGDMPPPPGSAGPGDNDMEEFYI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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