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Report for CCDS55792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55792.1 Public Homo sapiens 11 TLCD5 24 110 108 CCDS HistoryNCBI Gene:219902Re-query CCDS DB by CCDS ID:55792.1Re-query CCDS DB by GeneID:219902See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55792.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314475.6 ENSP00000312672.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314475.6Link to Ensembl Protein Viewer:ENSP00000312672.2Re-query CCDS DB by Nucleotide ID:ENST00000314475Re-query CCDS DB by Protein ID:ENSP00000312672
Original member Current member NCBI NM_001198670.2 NP_001185599.1 Accepted alive Link to Nucleotide Sequence:NM_001198670.2Link to Protein Sequence:NP_001185599.1Re-query CCDS DB by Nucleotide ID:NM_001198670Re-query CCDS DB by Protein ID:NP_001185599Link to BLAST:NP_001185599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185599.1 267 Q6ZRR5-3 267 100% 0 0

Chromosomal Locations for CCDS 55792.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120327376 120327640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120329977 120330515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGACCCAGTGCTGTTTTCTTAGGGTGCATCCTTTGTTTTTCTGGTTTTGGTCTTTTCATCACAGGATGG
CATTAGCTCTGTGTCTGCAGGTGCTGTGCAGCCTGTGTGGCTGGCTCTCGCTCTATATTTCTTTCTGCCA
CCTGAATAAGCACCGAAGCTATGAGTGGAGCTGCCGCCTGGTCACCTTCACCCATGGAGTCCTCTCTATA
GGCCTCTCCGCTTATATTGGCTTCATTGATGGCCCATGGCCTTTTACCCACCCAGGCTCACCCAATACAC
CTCTCCAAGTTCATGTCCTGTGTCTCACCTTGGGCTACTTCATCTTCGACTTGGGCTGGTGCGTCTACTT
TCAGTCTGAGGGTGCCTTGATGCTGGCTCATCACACATTGAGTATCTTGGGCATTATCATGGCCCTTGTG
CTTGGGGAGTCTGGCACAGAGGTCAATGCAGTCCTCTTTGGAAGTGAGCTTACCAACCCCTTGCTACAGA
TGCGCTGGTTTCTCCGGGAAACAGGGCACTATCACAGTTTCACTGGAGATGTAGTGGACTTCCTCTTTGT
GGCTCTGTTCACAGGAGTGAGGATTGGTGTGGGAGCTTGCCTCCTTTTCTGTGAAATGGTCTCCCCCACG
CCTAAGTGGTTTGTGAAGGCTGGGGGAGTAGCGATGTATGCTGTGTCTTGGTGTTTCATGTTTAGCATCT
GGCGCTTTGCATGGAGGAAGAGCATCAAGAAGTACCATGCTTGGAGAAGCAGGCGGAGTGAGGAACGGCA
GCTGAAACACAACGGACATCTCAAAATACACTAG

Translation (267 aa):
MTQCCFLRVHPLFFWFWSFHHRMALALCLQVLCSLCGWLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSI
GLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSILGIIMALV
LGESGTEVNAVLFGSELTNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPT
PKWFVKAGGVAMYAVSWCFMFSIWRFAWRKSIKKYHAWRSRRSEERQLKHNGHLKIH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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