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Report for CCDS55760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55760.1 Public Homo sapiens 11 ATG13 24 110 108 CCDS HistoryNCBI Gene:9776Re-query CCDS DB by CCDS ID:55760.1Re-query CCDS DB by GeneID:9776See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55760.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000528494.5 ENSP00000432412.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528494.5Link to Ensembl Protein Viewer:ENSP00000432412.1Re-query CCDS DB by Nucleotide ID:ENST00000528494Re-query CCDS DB by Protein ID:ENSP00000432412
Original member Current member EBI ENST00000683050.1 ENSP00000507809.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683050.1Link to Ensembl Protein Viewer:ENSP00000507809.1Re-query CCDS DB by Nucleotide ID:ENST00000683050Re-query CCDS DB by Protein ID:ENSP00000507809
Original member Current member NCBI NM_001205119.2 NP_001192048.1 Accepted alive Link to Nucleotide Sequence:NM_001205119.2Link to Protein Sequence:NP_001192048.1Re-query CCDS DB by Nucleotide ID:NM_001205119Re-query CCDS DB by Protein ID:NP_001192048Link to BLAST:NP_001192048.1
Original member Current member NCBI NM_001346311.2 NP_001333240.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001346311.2Link to Protein Sequence:NP_001333240.1Re-query CCDS DB by Nucleotide ID:NM_001346311Re-query CCDS DB by Protein ID:NP_001333240Link to BLAST:NP_001333240.1
Original member Current member NCBI NM_001346312.2 NP_001333241.1 Accepted alive Link to Nucleotide Sequence:NM_001346312.2Link to Protein Sequence:NP_001333241.1Re-query CCDS DB by Nucleotide ID:NM_001346312Re-query CCDS DB by Protein ID:NP_001333241Link to BLAST:NP_001333241.1
Original member Current member NCBI NM_001346313.2 NP_001333242.1 Accepted alive Link to Nucleotide Sequence:NM_001346313.2Link to Protein Sequence:NP_001333242.1Re-query CCDS DB by Nucleotide ID:NM_001346313Re-query CCDS DB by Protein ID:NP_001333242Link to BLAST:NP_001333242.1
Original member Current member NCBI NM_001346314.2 NP_001333243.1 Accepted alive Link to Nucleotide Sequence:NM_001346314.2Link to Protein Sequence:NP_001333243.1Re-query CCDS DB by Nucleotide ID:NM_001346314Re-query CCDS DB by Protein ID:NP_001333243Link to BLAST:NP_001333243.1
Original member Current member NCBI NM_001346315.2 NP_001333244.1 Accepted alive Link to Nucleotide Sequence:NM_001346315.2Link to Protein Sequence:NP_001333244.1Re-query CCDS DB by Nucleotide ID:NM_001346315Re-query CCDS DB by Protein ID:NP_001333244Link to BLAST:NP_001333244.1
Original member Current member NCBI NM_001346316.2 NP_001333245.1 Accepted alive Link to Nucleotide Sequence:NM_001346316.2Link to Protein Sequence:NP_001333245.1Re-query CCDS DB by Nucleotide ID:NM_001346316Re-query CCDS DB by Protein ID:NP_001333245Link to BLAST:NP_001333245.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192048.1 550 O75143-5 550 100% 0 0
NP_001333240.1 550 O75143-5 550 100% 0 0
NP_001333241.1 550 O75143-5 550 100% 0 0
NP_001333242.1 550 O75143-5 550 100% 0 0
NP_001333243.1 550 O75143-5 550 100% 0 0
NP_001333244.1 550 O75143-5 550 100% 0 0
NP_001333245.1 550 O75143-5 550 100% 0 0

Chromosomal Locations for CCDS 55760.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46644292 46644360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46645339 46645419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46645870 46645989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46649137 46649183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46650177 46650317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46656233 46656273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657095 46657191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657524 46657622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46659392 46659485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46663997 46664095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46664849 46664959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46665383 46665519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46667773 46667887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668499 46668576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668794 46668910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46669404 46669532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46672255 46672332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGAAACTGATCTCAATTCCCAGGACAGAAAGGACCTGGACAAGTTTATTAAATTTTTTGCCCTCAAGA
CTGTCCAAGTGATTGTCCAGGCTCGGCTTGGTGAAAAGATTTGCACTCGTTCATCATCTTCTCCAACGGG
TTCAGATTGGTTCAACTTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCACTGGCA
GGACAGCTGCCTGCAGTCGGGAGGTCCATGTGTGTGGAGATTTCACTTAAGACTTCTGAGGGAGATTCCA
TGGAGCTGGAAATATGGTGTCTTGAAATGAATGAAAAGTGTGATAAAGAAATCAAAGTTTCCTACACGGT
GTACAACAGACTGTCATTGCTGCTGAAGTCCCTTCTTGCTATAACTAGGGTGACACCAGCCTATAGGCTC
TCCAGGAAACAAGGGCATGAATATGTCATATTATACAGGATATATTTTGGAGAAGTTCAGCTGAGTGGCT
TAGGAGAAGGCTTCCAGACAGTTCGTGTTGGGACAGTGGGCACCCCTGTGGGCACCATCACTCTTTCTTG
TGCTTACAGAATTAACTTGGCATTCATGTCTACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATT
ATTATTGATCACTTTGTGGACCGTCCCTATCCCAGCTCCTCTCCCATGCACCCCTGCAATTACAGAACTG
CTGGTGAGGACACTGGAGTAATATACCCGTCTGTAGAAGACTCTCAAGAAGTGTGTACCACCTCTTTTTC
CACCTCCCCACCATCCCAGTGTGTGTTTACTGTCACAAAGGCACATTTTCAGACCCCTACTCCTGTGGTG
ACGGACACCCTGAGGGTCCCCATGGCAGGACTGGCCTTTTCCCATCAACTCTCAAGCTCTCGCCTTTCCT
ATCAGCCTGCTGCCCTGGGCGTTGGATCAGCTGACCTGGCTTATCCAGTAGTGTTTGCTGCTGGCTTAAA
TGCTACACACCCTCACCAGCTGATGGTTCCTGGGAAGGAAGGTGGGGTACCCCTTGCTCCCAACCAGCCT
GTCCATGGTACCCAGGCTGACCAGGAGAGACTGGCAACCTGCACCCCTTCTGACAGAACCCACTGTGCTG
CCACACCCTCCAGTAGTGAGGATACTGAAACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGA
TGTCTTGGAGACCATCTTTGTCCGAAAAGTGGGGGCTTTTGTCAACAAACCCATTAACCAGGTGACCCTG
ACGAGTTTGGATATACCCTTTGCCATGTTTGCTCCCAAGAATTTGGAGCTGGAGGATACCGATCCAATGG
TGAATCCTCCAGATTCCCCAGAGACTGAATCTCCTCTCCAGGGCAGCCTGCACTCAGATGGCTCCAGCGG
GGGCAGCAGTGGCAATACCCATGATGACTTTGTTATGATAGACTTTAAACCAGCTTTTTCTAAAGATGAC
ATTCTTCCGATGGACCTGGGGACCTTCTATCGGGAGTTTCAGAACCCACCTCAGCTGAGCAGCCTCTCCA
TAGATATTGGAGCACAGTCCATGGCTGAAGACTTGGACTCATTACCAGAGAAGCTGGCTGTGCATGAGAA
GAATGTCCGCGAGTTTGATGCCTTTGTGGAAACCCTGCAGTAA

Translation (550 aa):
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALA
GQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRL
SRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGI
IIDHFVDRPYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVV
TDTLRVPMAGLAFSHQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQP
VHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDD
ILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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