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Report for CCDS55725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55725.1 Public Homo sapiens 10 TLX1 24 110 108 CCDS HistoryNCBI Gene:3195Re-query CCDS DB by CCDS ID:55725.1Re-query CCDS DB by GeneID:3195See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000467928.2 ENSP00000434914.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000467928.2Link to Ensembl Protein Viewer:ENSP00000434914.2Re-query CCDS DB by Nucleotide ID:ENST00000467928Re-query CCDS DB by Protein ID:ENSP00000434914
Original member Current member NCBI NM_001195517.2 NP_001182446.1 Accepted alive Link to Nucleotide Sequence:NM_001195517.2Link to Protein Sequence:NP_001182446.1Re-query CCDS DB by Nucleotide ID:NM_001195517Re-query CCDS DB by Protein ID:NP_001182446Link to BLAST:NP_001182446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182446.1 257 P31314-2 257 100% 0 0

Chromosomal Locations for CCDS 55725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 101131542 101132109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101134175 101134376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101136668 101136671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGAGCACCTGGGTCCGCACCACCTCCACCCGGGTCACGCAGAGCCCATTAGCTTCGGCATCGACCAGA
TCCTCAACAGCCCGGACCAGGGTGGCTGCATGGGACCCGCCTCGCGCCTCCAGGACGGAGAATACGGCCT
TGGCTGCTTGGTCGGAGGCGCCTACACTTACGGCGGCGGGGGCTCCGCGGCCGCGACGGGGGCTGGAGGA
GCGGGGGCCTATGGTACTGGAGGTCCCGGCGGCCCCGGAGGCCCGGCAGGCGGCGGCGGCGCCTGCAGCA
TGGGTCCTCTGACCGGCTCCTACAACGTGAACATGGCCTTGGCAGGCGGCCCCGGTCCTGGCGGCGGCGG
CGGCAGCAGCGGCGGTGCCGGGGCACTCAGCGCTGCGGGGGTAATCCGGGTGCCGGCACACAGGCCGCTC
GCCGGAGCCGTGGCCCACCCCCAGCCCCTGGCCACCGGCTTGCCCACCGTGCCCTCTGTGCCTGCCATGC
CGGGCGTCAACAACCTCACTGGCCTCACCTTCCCCTGGATGGAGAGTAACCGCAGATACACAAAGGACAG
GTTCACAGGTCACCCCTATCAGAACCGGACGCCCCCCAAGAAGAAGAAGCCGCGCACGTCCTTCACACGC
CTGCAGATCTGCGAGCTGGAGAAGCGCTTCCACCGCCAGAAGTACCTGGCCTCGGCCGAGCGCGCCGCCC
TGGCCAAGGCGCTCAAAATGACCGATGCGCAGGTCAAAACCTGGTTCCAGAACCGGCGGACAAAGTGGAG
GTAA

Translation (257 aa):
MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGGSAAATGAGG
AGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSSGGAGALSAAGVIRVPAHRPL
AGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTR
LQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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