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Report for CCDS55700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55700.1 Public Homo sapiens 10 PITRM1 24 110 108 CCDS HistoryNCBI Gene:10531Re-query CCDS DB by CCDS ID:55700.1Re-query CCDS DB by GeneID:10531See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451104.6 ENSP00000401201.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451104.6Link to Ensembl Protein Viewer:ENSP00000401201.2Re-query CCDS DB by Nucleotide ID:ENST00000451104Re-query CCDS DB by Protein ID:ENSP00000401201
Original member Current member NCBI NM_001242309.1 NP_001229238.1 Accepted alive Link to Nucleotide Sequence:NM_001242309.1Link to Protein Sequence:NP_001229238.1Re-query CCDS DB by Nucleotide ID:NM_001242309Re-query CCDS DB by Protein ID:NP_001229238Link to BLAST:NP_001229238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229238.1 939 Q5JRX3-3 939 100% 0 0

Chromosomal Locations for CCDS 55700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 3138031 3138124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3138235 3138337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3138904 3139049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3140687 3140812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3143389 3143501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3144292 3144366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3145596 3145716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3147150 3147250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3147572 3147737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3149621 3149753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3151247 3151363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3155591 3155729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3156930 3157064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3157435 3157531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3158040 3158153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3158914 3159042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3159848 3159936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3160204 3160330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3163725 3163885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3165238 3165334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3165413 3165527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3166229 3166380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3166936 3167042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3172717 3172779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2820 nt):
ATGCGCAATGTGGCGCTGCGGCGGGCGGCAGGGCCTGTGTGTGCTGAGGCGGCTGAGCGGCGGGTGACAT
CTGTTCCCGAGCTGTTCCTGACTGCAGTGAAGCTCACCCATGATGACACAGGAGCCAGGTATTTACACCT
GGCCAGAGAAGACACGAATAATCTGTTCAGCGTGCAGTTCCGTACTACTCCCATGGACAGTACTGGTGTT
CCTCACATTCTTGAGCATACCGTCCTTTGTGGGTCTCAGAAATATCCGTGCAGAGACCCTTTCTTCAAAA
TGTTGAACCGGTCCCTCTCCACGTTCATGAACGCCTTCACAGCTAGTGATTATACTCTGTATCCATTTTC
CACACAAAATCCCAAGGACTTTCAGAATCTCCTCTCGGTGTATTTGGATGCCACCTTTTTCCCATGTTTA
CGCGAGCTGGATTTCTGGCAGGAAGGATGGCGGCTGGAACATGAGAATCCGAGCGACCCCCAGACGCCCT
TGGTCTTTAAAGGAGTCGTCTTTAATGAGATGAAGGGAGCGTTTACAGACAATGAGAGGATATTCTCCCA
GCACCTTCAGAACAGACTTCTTCCTGACCACACGTACTCAGTGGTCTCCGGGGGTGACCCACTGTGCATC
CCGGAGCTTACATGGGAGCAGCTTAAGCAGTTTCATGCCACTCACTATCACCCAAGCAATGCTAGGTTCT
TCACGTACGGTAATTTTCCATTAGAACAGCATCTGAAACAAATTCACGAGGAAGCACTGAGCAAATTCCA
GAAAATTGAACCAAGCACCGTGGTGCCAGCTCAGACACCCTGGGACAAGCCTAGGGAATTCCAGATAACA
TGTGGCCCGGATTCATTTGCTACAGATCCCTCTAAACAAACAACCATCAGCGTTAGCTTCCTCTTACCGG
ACATCACCGACACATTTGAAGCCTTCACATTAAGTCTTCTGTCTTCACTCTTGACTTCTGGGCCCAATTC
TCCCTTTTACAAAGCCTTGATTGAATCTGGCCTTGGCACAGACTTTTCTCCTGATGTTGGATATAATGGC
TACACGAGGGAGGCCTACTTTAGTGTCGGCCTCCAAGGGATTGCGGAGAAAGACATTGAGACCGTCAGAA
GCCTCATAGACAGAACGATTGATGAAGTAGTTGAGAAAGGATTTGAAGATGATCGAATTGAGGCTTTACT
TCATAAAATTGAAATACAGATGAAACATCAGTCTACCAGCTTTGGGCTGATGCTGACATCATACATAGCT
TCTTGCTGGAACCATGATGGGGACCCTGTGGAGCTCTTGAAGTTGGGAAATCAGTTAGCTAAATTCAGAC
AGTGCCTGCAGGAAAATCCAAAATTTTTGCAAGAAAAAGTAAAACAGTATTTTAAGAATAACCAGCATAA
GCTGACTTTATCGATGAGGCCAGATGACAAGTATCACGAGAAGCAGGCACAGGTGGAAGCCACGAAGCTC
AAGCAGAAGGTCGAGGCTCTGTCCCCCGGAGACAGGCAGCAGATCTACGAGAAAGGTCTAGAATTACGGA
GTCAACAAAGCAAACCTCAAGATGCCTCTTGTCTGCCAGCGTTGAAAGTTTCCGATATTGAACCCACCAT
ACCTGTCACAGAGTTGGACGTGGTCCTGACAGCTGGAGATATCCCTGTTCAGTACTGCGCCCAGCCCACC
AATGGCATGGTGTATTTCCGGGCCTTCTCCAGCCTGAACACACTCCCCGAGGAGCTGAGGCCCTATGTGC
CCCTCTTCTGCAGCGTCCTCACCAACCCGTGCTTTGAAGAAGAGGAGCACTTCAAGGTGCTGGTGAAGAT
GACCGCCCAGGAGCTCGCCAATGGAATTCCTGACTCTGGGCACCTGTACGCATCCATCAGGGCAGGCCGG
ACCCTCACGCCCGCAGGGGACCTGCAGGAGACCTTCAGCGGGATGGATCAGGTGCGGCTGATGAAGAGGA
TTGCAGAAATGACAGATATCAAACCCATCCTGAGGAAGCTCCCGCGTATCAAGAAACACTTGTTAAATGG
TGATAATATGAGGTGTTCAGTGAATGCGACTCCTCAGCAGATGCCTCAGACAGAAAAAGCGGTCGAAGAC
TTCCTTAGAAGCATCGGTCGGAGTAAAAAGGAACGGAGGCCTGTGCGCCCACACACGGTCGAGAAACCTG
TGCCCAGCAGCTCTGGTGGAGATGCCCACGTTCCCCATGGCTCCCAGGTCATTAGGAAGCTGGTCATGGA
ACCCACCTTCAAGCCCTGGCAGATGAAGACTCACTTCCTGATGCCCTTCCCGGTGAATTACGTGGGTGAA
TGCATCCGAACTGTCCCCTACACGGACCCAGATCATGCCAGTCTTAAAATCCTTGCACGTTTGATGACTG
CCAAATTCTTGCATACAGAAATTCGAGAAAAAGGCGGTGCTTATGGTGGAGGCGCAAAACTCAGCCACAA
TGGGATTTTCACCCTTTACTCTTACAGGGACCCAAATACAATAGAGACGCTCCAGTCTTTTGGGAAGGCT
GTCGACTGGGCTAAGTCTGGAAAATTCACACAGCAAGACATCGACGAAGCCAAACTTTCTGTCTTCTCAA
CCGTAGATGCTCCTGTCGCTCCTTCAGACAAAGGAATGGACCACTTCTTGTACGGCCTCTCGGATGAGAT
GAAGCAGGCCCACAGAGAGCAGCTCTTTGCTGTCAGCCACGACAAGCTCCTGGCCGTGAGCGATAGATAC
CTCGGCACTGGGAAGAGCACACACGGCCTGGCCATCCTCGGACCCGAGAACCCGAAAATTGCCAAGGACC
CATCCTGGATCATCCAATGA

Translation (939 aa):
MRNVALRRAAGPVCAEAAERRVTSVPELFLTAVKLTHDDTGARYLHLAREDTNNLFSVQFRTTPMDSTGV
PHILEHTVLCGSQKYPCRDPFFKMLNRSLSTFMNAFTASDYTLYPFSTQNPKDFQNLLSVYLDATFFPCL
RELDFWQEGWRLEHENPSDPQTPLVFKGVVFNEMKGAFTDNERIFSQHLQNRLLPDHTYSVVSGGDPLCI
PELTWEQLKQFHATHYHPSNARFFTYGNFPLEQHLKQIHEEALSKFQKIEPSTVVPAQTPWDKPREFQIT
CGPDSFATDPSKQTTISVSFLLPDITDTFEAFTLSLLSSLLTSGPNSPFYKALIESGLGTDFSPDVGYNG
YTREAYFSVGLQGIAEKDIETVRSLIDRTIDEVVEKGFEDDRIEALLHKIEIQMKHQSTSFGLMLTSYIA
SCWNHDGDPVELLKLGNQLAKFRQCLQENPKFLQEKVKQYFKNNQHKLTLSMRPDDKYHEKQAQVEATKL
KQKVEALSPGDRQQIYEKGLELRSQQSKPQDASCLPALKVSDIEPTIPVTELDVVLTAGDIPVQYCAQPT
NGMVYFRAFSSLNTLPEELRPYVPLFCSVLTNPCFEEEEHFKVLVKMTAQELANGIPDSGHLYASIRAGR
TLTPAGDLQETFSGMDQVRLMKRIAEMTDIKPILRKLPRIKKHLLNGDNMRCSVNATPQQMPQTEKAVED
FLRSIGRSKKERRPVRPHTVEKPVPSSSGGDAHVPHGSQVIRKLVMEPTFKPWQMKTHFLMPFPVNYVGE
CIRTVPYTDPDHASLKILARLMTAKFLHTEIREKGGAYGGGAKLSHNGIFTLYSYRDPNTIETLQSFGKA
VDWAKSGKFTQQDIDEAKLSVFSTVDAPVAPSDKGMDHFLYGLSDEMKQAHREQLFAVSHDKLLAVSDRY
LGTGKSTHGLAILGPENPKIAKDPSWIIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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