NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55676.1 Public Homo sapiens 1 TMCC2 24 110 108 CCDS HistoryNCBI Gene:9911Re-query CCDS DB by CCDS ID:55676.1Re-query CCDS DB by GeneID:9911See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545499.5 ENSP00000437943.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545499.5Link to Ensembl Protein Viewer:ENSP00000437943.1Re-query CCDS DB by Nucleotide ID:ENST00000545499Re-query CCDS DB by Protein ID:ENSP00000437943
Original member Current member NCBI NM_001242925.2 NP_001229854.1 Accepted alive Link to Nucleotide Sequence:NM_001242925.2Link to Protein Sequence:NP_001229854.1Re-query CCDS DB by Nucleotide ID:NM_001242925Re-query CCDS DB by Protein ID:NP_001229854Link to BLAST:NP_001229854.1
Original member Current member NCBI NM_001375651.1 NP_001362580.1 Accepted alive Link to Nucleotide Sequence:NM_001375651.1Link to Protein Sequence:NP_001362580.1Re-query CCDS DB by Nucleotide ID:NM_001375651Re-query CCDS DB by Protein ID:NP_001362580Link to BLAST:NP_001362580.1
Original member Current member NCBI NM_001375652.1 NP_001362581.1 Accepted alive Link to Nucleotide Sequence:NM_001375652.1Link to Protein Sequence:NP_001362581.1Re-query CCDS DB by Nucleotide ID:NM_001375652Re-query CCDS DB by Protein ID:NP_001362581Link to BLAST:NP_001362581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229854.1 631 O75069-2 631 100% 0 0
NP_001362580.1 631 O75069-2 631 100% 0 0
NP_001362581.1 631 O75069-2 631 100% 0 0

Chromosomal Locations for CCDS 55676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205241532 205242044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205268950 205269884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205271120 205271255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205271813 205272124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGTTTGGCCACGGTCTGAAGCACCTGTTCCACAGCCGCCGTCGGTCTCGGGAAAGGGAGCACCAGACGT
CTCAGGATTCCCAGCAGCATCAGCAGCAGCAGGGTATGTCCGACCATGACTCCCCAGATGAGAAGGAGCG
CTCTCCGGAGATGCATCGCGTCTCCTACGCCATGTCCCTGCACGACCTGCCCGCCCGGCCCACCGCCTTC
AACCGCGTGCTGCAGCAGATCCGCTCCCGGCCCTCCATCAAGCGGGGCGCCAGCCTGCACAGCAGCAGTG
GGGGCGGCAGCAGCGGGAGCAGCAGCCGGCGCACCAAGAGTAGCTCCCTGGAGCCCCAGCGTGGCAGCCC
TCACCTGCTGCGCAAGGCCCCCCAGGACAGCAGCCTGGCCGCCATCCTGCACCAGCACCAGTGCCGTCCC
CGCTCTTCCTCCACCACCGACACTGCTCTGCTGCTGGCCGACGGCAGCAACGTGTACCTCCTGGCTGAGG
AGGCCGAAGGCATCGGGGACAAGGTCGATAAGGGAGACCTGGTGGCCCTGAGCCTCCCCGCCGGCCATGG
TGACACCGACGGCCCCATCAGCCTGGACGTGCCCGATGGGGCACCGGACCCCCAGCGGACCAAGGCCGCC
ATTGACCACCTGCACCAGAAGATCCTGAAGATCACCGAGCAGATCAAGATTGAGCAGGAGGCTCGCGACG
ACAATGTGGCAGAGTATCTGAAACTGGCCAACAACGCGGACAAGCAGCAGGTGTCACGCATCAAGCAAGT
GTTCGAGAAGAAGAACCAGAAGTCAGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGC
CGGCGCCTGAAGGAGATTGAGCAGAACGGGCCCTCGCGGCAGCCCAAGGACGTGCTGCGGGACATGCAGC
AGGGGCTGAAGGACGTGGGCGCCAACGTGCGCGCAGGCATCAGCGGCTTTGGGGGCGGCGTGGTGGAGGG
CGTCAAGGGCAGCCTCTCTGGCCTCTCACAGGCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTT
GCCAGCCTCATCCGCAACAAGTTTGGCAGTGCTGACAACATCGCCCACCTGAAGGACCCCCTGGAAGATG
GGCCCCCTGAGGAGGCAGCCCGGGCACTGAGCGGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAG
CGATGATGAGTGCTCCAGCGCCAGCGCCAGCTCAGCCGGGGCAGGCAGCAACTCTGGGGCTGGGCCTGGT
GGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTATGGTGCTCCTGGAAACCTGGATGCTCTGCTGGAAG
AGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGACTCCATGGAAGACCTGAAGACTCAGCTGCA
GAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCTACAGGTACGAGCGGCTGGAGGAGCAG
CTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAGCAGGAGCTGGCCAGCATGGAGG
AGAAGGTGGCCTACCAGTCCTATGAGAGGGCACGGGACATCCAGGAGGCCGTGGAGTCCTGCCTGACCCG
GGTCACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTGGTACAGCTGGAGGGCGTGGAGAATGCCAAC
GCGCGGGCGCTGCTGGGCAAGTTCATCAACGTGATCCTGGCGCTCATGGCCGTGCTGCTGGTGTTCGTGT
CCACCATCGCCAACTTCATCACGCCCCTCATGAAGACACGCCTGCGCATCACCAGCACCACCCTCCTGGT
CCTCGTCCTGTTCCTCCTCTGGAAGCACTGGGACTCCCTCACCTACCTCCTGGAGCACGTGTTGCTGCCC
AGCTGA

Translation (631 aa):
MFGHGLKHLFHSRRRSREREHQTSQDSQQHQQQQGMSDHDSPDEKERSPEMHRVSYAMSLHDLPARPTAF
NRVLQQIRSRPSIKRGASLHSSSGGGSSGSSSRRTKSSSLEPQRGSPHLLRKAPQDSSLAAILHQHQCRP
RSSSTTDTALLLADGSNVYLLAEEAEGIGDKVDKGDLVALSLPAGHGDTDGPISLDVPDGAPDPQRTKAA
IDHLHQKILKITEQIKIEQEARDDNVAEYLKLANNADKQQVSRIKQVFEKKNQKSAQTIAQLHKKLEHYR
RRLKEIEQNGPSRQPKDVLRDMQQGLKDVGANVRAGISGFGGGVVEGVKGSLSGLSQATHTAVVSKPREF
ASLIRNKFGSADNIAHLKDPLEDGPPEEAARALSGSATLVSSPKYGSDDECSSASASSAGAGSNSGAGPG
GALGSPKSNALYGAPGNLDALLEELREIKEGQSHLEDSMEDLKTQLQRDYTYMTQCLQEERYRYERLEEQ
LNDLTELHQNEMTNLKQELASMEEKVAYQSYERARDIQEAVESCLTRVTKLELQQQQQQVVQLEGVENAN
ARALLGKFINVILALMAVLLVFVSTIANFITPLMKTRLRITSTTLLVLVLFLLWKHWDSLTYLLEHVLLP
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH