NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55619.1 Public Homo sapiens 1 PSMA5 24 110 108 CCDS HistoryNCBI Gene:5686Re-query CCDS DB by CCDS ID:55619.1Re-query CCDS DB by GeneID:5686See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55619.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538610.5 ENSP00000440618.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538610.5Link to Ensembl Protein Viewer:ENSP00000440618.1Re-query CCDS DB by Nucleotide ID:ENST00000538610Re-query CCDS DB by Protein ID:ENSP00000440618
Original member Current member NCBI NM_001199772.2 NP_001186701.1 Accepted alive Link to Nucleotide Sequence:NM_001199772.2Link to Protein Sequence:NP_001186701.1Re-query CCDS DB by Nucleotide ID:NM_001199772Re-query CCDS DB by Protein ID:NP_001186701Link to BLAST:NP_001186701.1
Original member Current member NCBI NM_001199773.2 NP_001186702.1 Accepted alive Link to Nucleotide Sequence:NM_001199773.2Link to Protein Sequence:NP_001186702.1Re-query CCDS DB by Nucleotide ID:NM_001199773Re-query CCDS DB by Protein ID:NP_001186702Link to BLAST:NP_001186702.1
Original member Current member NCBI NM_001199774.2 NP_001186703.1 Accepted alive Link to Nucleotide Sequence:NM_001199774.2Link to Protein Sequence:NP_001186703.1Re-query CCDS DB by Nucleotide ID:NM_001199774Re-query CCDS DB by Protein ID:NP_001186703Link to BLAST:NP_001186703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186701.1 183 P28066-2 183 100% 0 0
NP_001186702.1 183 P28066-2 183 100% 0 0
NP_001186703.1 183 P28066-2 183 100% 0 0

Chromosomal Locations for CCDS 55619.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109402013 109402090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109409928 109410014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109411011 109411113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109411877 109411935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109412077 109412184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109413068 109413135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109415237 109415285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGAGCCCAGCAGCATTGAGAAAATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGGCTAA
TTGCTGATGCTAAGACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACCACTGGTTCACCTACAATGA
GACAATGACAGTGGAGAGTGTGACCCAAGCTGTGTCCAATCTGGCTTTGCAGTTTGGAGAAGAAGATGCA
GATCCAGGTGCCATGTCTCGTCCCTTTGGAGTAGCATTATTATTTGGAGGAGTTGATGAGAAAGGACCCC
AGCTGTTTCATATGGACCCATCTGGGACCTTTGTACAGTGTGATGCTCGAGCAATTGGCTCTGCTTCAGA
GGGTGCCCAGAGCTCCTTGCAAGAAGTTTACCACAAGTCTATGACTTTGAAAGAAGCCATCAAGTCTTCA
CTCATCATCCTCAAACAAGTAATGGAGGAGAAGCTGAATGCAACAAACATTGAGCTAGCCACAGTGCAGC
CTGGCCAGAATTTCCACATGTTCACAAAGGAAGAACTTGAAGAGGTTATCAAGGACATTTAA

Translation (183 aa):
MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDA
DPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSS
LIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH